BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (277 letters)

Distribution of 70 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           414   e-116 



>GCTS_68 
          Length = 6534396

 Score =  414 bits (209), Expect = e-116
 Identities = 221/225 (98%)
 Strand = Plus / Minus

                                                                           
Query: 53      tactcaatatcgcctcggtggccgccttccagcccggcgcctggatgagcaactactacg 112
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523947 tactcaatatcgcctcggtggccgccttccagcccggcgcctggatgagcaactactacg 6523888

                                                                           
Query: 113     ccagcaaggcctacgtcctgcacttctcggaaggcttgcgggaagaactgaaagggcgcg 172
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523887 ccagcaaggcctacgtcctgcacttctcggaaggcttgcgggaagaactgaaagggcgcg 6523828

                                                                           
Query: 173     gcgtcaaggtctcggtgctgtgccctgggccaacccgtacggcattcttccgggaagccg 232
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523827 gcgtcaaggtctcggtgctgtgccctgggccaacccgtacggcattcttccgggaagccg 6523768

                                                            
Query: 233     gtatgcggctcggcaagttcaaccggagcaagctgatgatgaccc 277
               | ||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 6523767 ggatgcggctcggcaggctcgaccggagcaagctgatgatgaccc 6523723






 Score = 34.2 bits (17), Expect = 0.087
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 73      gccgccttccagcccggcgcc 93
               |||||||||||||| ||||||
Sbjct: 6184429 gccgccttccagccgggcgcc 6184449






 Score = 32.2 bits (16), Expect = 0.34
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 193     tgccctgggccaaccc 208
               ||||||||||||||||
Sbjct: 2809466 tgccctgggccaaccc 2809481






 Score = 32.2 bits (16), Expect = 0.34
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 78      cttccagcccggcgcc 93
               ||||||||||||||||
Sbjct: 3336366 cttccagcccggcgcc 3336381






 Score = 32.2 bits (16), Expect = 0.34
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 71      tggccgccttccagcc 86
               ||||||||||||||||
Sbjct: 4470585 tggccgccttccagcc 4470570






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 80     tccagcccggcgcct 94
              |||||||||||||||
Sbjct: 169299 tccagcccggcgcct 169285






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 61     atcgcctcggtggcc 75
              |||||||||||||||
Sbjct: 315914 atcgcctcggtggcc 315928






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 178     aaggtctcggtgctg 192
               |||||||||||||||
Sbjct: 1333277 aaggtctcggtgctg 1333291






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 82      cagcccggcgcctgg 96
               |||||||||||||||
Sbjct: 1398277 cagcccggcgcctgg 1398291






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 66      ctcggtggccgcctt 80
               |||||||||||||||
Sbjct: 1463431 ctcggtggccgcctt 1463417






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 65      cctcggtggccgcct 79
               |||||||||||||||
Sbjct: 2054479 cctcggtggccgcct 2054493






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 56      tcaatatcgcctcggtggc 74
               |||||| ||||||||||||
Sbjct: 2213443 tcaataccgcctcggtggc 2213425






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 80      tccagcccggcgcct 94
               |||||||||||||||
Sbjct: 3446348 tccagcccggcgcct 3446334






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 68      cggtggccgccttccagcc 86
               |||||||||||| ||||||
Sbjct: 4446323 cggtggccgcctgccagcc 4446305






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 168     gcgcggcgtcaaggt 182
               |||||||||||||||
Sbjct: 4449690 gcgcggcgtcaaggt 4449676






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 220     ttccgggaagccggt 234
               |||||||||||||||
Sbjct: 4983585 ttccgggaagccggt 4983571






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 75      cgccttccagcccggcgcc 93
               ||||||||||| |||||||
Sbjct: 5162646 cgccttccagcgcggcgcc 5162628






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 235     atgcggctcggcaag 249
               |||||||||||||||
Sbjct: 6197800 atgcggctcggcaag 6197814






 Score = 30.2 bits (15), Expect = 1.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 65      cctcggtggccgcct 79
               |||||||||||||||
Sbjct: 6199435 cctcggtggccgcct 6199449






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 75     cgccttccagcccg 88
              ||||||||||||||
Sbjct: 520968 cgccttccagcccg 520955






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 87     cggcgcctggatga 100
              ||||||||||||||
Sbjct: 913067 cggcgcctggatga 913080






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 84     gcccggcgcctgga 97
              ||||||||||||||
Sbjct: 963188 gcccggcgcctgga 963175






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 63      cgcctcggtggccgcctt 80
               |||||||||||| |||||
Sbjct: 1038264 cgcctcggtggcggcctt 1038247






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 111     cgccagcaaggcct 124
               ||||||||||||||
Sbjct: 1266196 cgccagcaaggcct 1266183






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 84      gcccggcgcctgga 97
               ||||||||||||||
Sbjct: 1601291 gcccggcgcctgga 1601278






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 78      cttccagcccggcg 91
               ||||||||||||||
Sbjct: 1684622 cttccagcccggcg 1684635






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 122     cctacgtcctgcac 135
               ||||||||||||||
Sbjct: 1722517 cctacgtcctgcac 1722530






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 161     tgaaagggcgcggc 174
               ||||||||||||||
Sbjct: 1849718 tgaaagggcgcggc 1849705






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 79      ttccagcccggcgc 92
               ||||||||||||||
Sbjct: 1903238 ttccagcccggcgc 1903225






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 66      ctcggtggccgcct 79
               ||||||||||||||
Sbjct: 1927167 ctcggtggccgcct 1927180






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 111     cgccagcaaggcct 124
               ||||||||||||||
Sbjct: 2047256 cgccagcaaggcct 2047269






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 107     actacgccagcaag 120
               ||||||||||||||
Sbjct: 2064670 actacgccagcaag 2064657






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 84      gcccggcgcctgga 97
               ||||||||||||||
Sbjct: 2109868 gcccggcgcctgga 2109881






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 104     actactacgccagc 117
               ||||||||||||||
Sbjct: 2323903 actactacgccagc 2323916






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 20/22 (90%)
 Strand = Plus / Plus

                                     
Query: 169     cgcggcgtcaaggtctcggtgc 190
               |||| ||| |||||||||||||
Sbjct: 2376786 cgcgacgtgaaggtctcggtgc 2376807






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 179     aggtctcggtgctg 192
               ||||||||||||||
Sbjct: 2575268 aggtctcggtgctg 2575281






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 80      tccagcccggcgcc 93
               ||||||||||||||
Sbjct: 2624860 tccagcccggcgcc 2624847






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 80      tccagcccggcgcctgga 97
               ||||||||||| ||||||
Sbjct: 2776006 tccagcccggctcctgga 2776023






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 259     agcaagctgatgatgacc 276
               |||| |||||||||||||
Sbjct: 2865816 agcacgctgatgatgacc 2865833






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 86      ccggcgcctggatg 99
               ||||||||||||||
Sbjct: 2884310 ccggcgcctggatg 2884323






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 61      atcgcctcggtggc 74
               ||||||||||||||
Sbjct: 2954466 atcgcctcggtggc 2954479






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 70      gtggccgccttcca 83
               ||||||||||||||
Sbjct: 2975478 gtggccgccttcca 2975465






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 65      cctcggtggccgcc 78
               ||||||||||||||
Sbjct: 3072436 cctcggtggccgcc 3072449






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 78      cttccagcccggcg 91
               ||||||||||||||
Sbjct: 3149090 cttccagcccggcg 3149077






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 85      cccggcgcctggat 98
               ||||||||||||||
Sbjct: 3269421 cccggcgcctggat 3269408






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 243     cggcaagttcaacc 256
               ||||||||||||||
Sbjct: 3273351 cggcaagttcaacc 3273338






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 167     ggcgcggcgtcaag 180
               ||||||||||||||
Sbjct: 3372108 ggcgcggcgtcaag 3372121






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 179     aggtctcggtgctg 192
               ||||||||||||||
Sbjct: 3505577 aggtctcggtgctg 3505564






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 193     tgccctgggccaac 206
               ||||||||||||||
Sbjct: 3518264 tgccctgggccaac 3518251






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 61      atcgcctcggtggc 74
               ||||||||||||||
Sbjct: 3737258 atcgcctcggtggc 3737245






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 82      cagcccggcgcctg 95
               ||||||||||||||
Sbjct: 3998046 cagcccggcgcctg 3998059






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 63      cgcctcggtggccg 76
               ||||||||||||||
Sbjct: 4075708 cgcctcggtggccg 4075695






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 83      agcccggcgcctgg 96
               ||||||||||||||
Sbjct: 4146907 agcccggcgcctgg 4146920






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 168     gcgcggcgtcaagg 181
               ||||||||||||||
Sbjct: 4382124 gcgcggcgtcaagg 4382137






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 218     tcttccgggaagcc 231
               ||||||||||||||
Sbjct: 4499402 tcttccgggaagcc 4499389






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 119     aggcctacgtcctg 132
               ||||||||||||||
Sbjct: 4574335 aggcctacgtcctg 4574322






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 81      ccagcccggcgcct 94
               ||||||||||||||
Sbjct: 4651352 ccagcccggcgcct 4651365






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 260     gcaagctgatgatg 273
               ||||||||||||||
Sbjct: 5187615 gcaagctgatgatg 5187628






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 68      cggtggccgccttc 81
               ||||||||||||||
Sbjct: 5337957 cggtggccgccttc 5337970






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 230     ccggtatgcggctc 243
               ||||||||||||||
Sbjct: 5547452 ccggtatgcggctc 5547465






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 83      agcccggcgcctgg 96
               ||||||||||||||
Sbjct: 5625465 agcccggcgcctgg 5625452






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 72      ggccgccttccagc 85
               ||||||||||||||
Sbjct: 5739200 ggccgccttccagc 5739187






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 116     gcaaggcctacgtc 129
               ||||||||||||||
Sbjct: 5777400 gcaaggcctacgtc 5777387






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 73      gccgccttccagcc 86
               ||||||||||||||
Sbjct: 5829559 gccgccttccagcc 5829572






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 80      tccagcccggcgcc 93
               ||||||||||||||
Sbjct: 5995168 tccagcccggcgcc 5995181






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 83      agcccggcgcctgg 96
               ||||||||||||||
Sbjct: 6019059 agcccggcgcctgg 6019046






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 111     cgccagcaaggcct 124
               ||||||||||||||
Sbjct: 6119819 cgccagcaaggcct 6119806






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 111     cgccagcaaggcct 124
               ||||||||||||||
Sbjct: 6273946 cgccagcaaggcct 6273933






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 226     gaagccggtatgcg 239
               ||||||||||||||
Sbjct: 6321951 gaagccggtatgcg 6321938






 Score = 28.2 bits (14), Expect = 5.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 110     acgccagcaaggcc 123
               ||||||||||||||
Sbjct: 6436616 acgccagcaaggcc 6436603






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2566
Number of Sequences: 1
Number of extensions: 2566
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of query: 277
length of database: 6,534,396
effective HSP length: 15
effective length of query: 262
effective length of database: 6,534,381
effective search space: 1712007822
effective search space used: 1712007822
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)