BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (164 letters)

Distribution of 15 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                            98   4e-21 
>GCTS_68 
          Length = 6534396

 Score = 97.6 bits (49), Expect = 4e-21
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                                
Query: 90      gacctcgacgctgagatagggcgtgtccagctgctggcggatactgcgg 138
               |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6243055 gacctcgacgctgagatagggcgtgtccagctgctggcggatactgcgg 6243103

 Score = 34.2 bits (17), Expect = 0.050
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 92      cctcgacgctgagatag 108
               |||||||||||||||||
Sbjct: 2219761 cctcgacgctgagatag 2219745

 Score = 32.2 bits (16), Expect = 0.20
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 115     tccagctgctggcgga 130
               ||||||||||||||||
Sbjct: 2710880 tccagctgctggcgga 2710865

 Score = 32.2 bits (16), Expect = 0.20
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 64      ccgcgcatcatctgcaggcc 83
               ||||||| ||||||||||||
Sbjct: 4473662 ccgcgcagcatctgcaggcc 4473681

 Score = 32.2 bits (16), Expect = 0.20
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 77      gcaggcctggccagac 92
               ||||||||||||||||
Sbjct: 4545339 gcaggcctggccagac 4545324

 Score = 30.2 bits (15), Expect = 0.77
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 115     tccagctgctggcgg 129
               |||||||||||||||
Sbjct: 4435755 tccagctgctggcgg 4435769

 Score = 28.2 bits (14), Expect = 3.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 119    gctgctggcggata 132
              ||||||||||||||
Sbjct: 476433 gctgctggcggata 476446

 Score = 28.2 bits (14), Expect = 3.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 89     agacctcgacgctg 102
              ||||||||||||||
Sbjct: 940898 agacctcgacgctg 940911

 Score = 28.2 bits (14), Expect = 3.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 77      gcaggcctggccag 90
               ||||||||||||||
Sbjct: 2122097 gcaggcctggccag 2122110

 Score = 28.2 bits (14), Expect = 3.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 119     gctgctggcggata 132
               ||||||||||||||
Sbjct: 3106377 gctgctggcggata 3106364

 Score = 28.2 bits (14), Expect = 3.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 62      ccccgcgcatcatc 75
               ||||||||||||||
Sbjct: 3259110 ccccgcgcatcatc 3259097

 Score = 28.2 bits (14), Expect = 3.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 65      cgcgcatcatctgc 78
               ||||||||||||||
Sbjct: 3900342 cgcgcatcatctgc 3900329

 Score = 28.2 bits (14), Expect = 3.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 65      cgcgcatcatctgc 78
               ||||||||||||||
Sbjct: 5993721 cgcgcatcatctgc 5993734

 Score = 28.2 bits (14), Expect = 3.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 55      gatactgccccgcg 68
               ||||||||||||||
Sbjct: 6055054 gatactgccccgcg 6055067

 Score = 28.2 bits (14), Expect = 3.1
 Identities = 20/22 (90%)
 Strand = Plus / Minus

                                     
Query: 110     gcgtgtccagctgctggcggat 131
               |||| ||||| |||||||||||
Sbjct: 6334756 gcgtctccagttgctggcggat 6334735
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1191
Number of Sequences: 1
Number of extensions: 1191
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 164
length of database: 6,534,396
effective HSP length: 15
effective length of query: 149
effective length of database: 6,534,381
effective search space: 973622769
effective search space used: 973622769
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)