BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (964 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           694   0.0   

>GCTS_68 
          Length = 6534396

 Score =  694 bits (350), Expect = 0.0
 Identities = 353/354 (99%)
 Strand = Plus / Plus

                                                                           
Query: 122     tactacccgtccagtgccaatcgcctgtacgtggcgatgggcgagcctcggcagttccag 181
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5973540 tactacccgtccagtgccaatcgcctgtacgtggcgatgggcgagcctcggcagttccag 5973599

                                                                           
Query: 182     ctgtcgacgacggtggagttctgagtcggcgctcgttccaggtggggttccccggcgtcc 241
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5973600 ctgtcgacgacggtggagttctgagtcggcgctcgttccaggtggggttccccggcgtcc 5973659

                                                                           
Query: 242     tcctggacgtggaggccccccctgaagggcgaagggtcggcgcgatgctgcccgaccatg 301
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5973660 tcctggacgtggaggccccccctgaagggcgaagggtcggcgcgatgctgcccgaccatg 5973719

                                                                           
Query: 302     ctccatccggttccttcttcccccagggaagggattgcccggcacgtgagtcgttccgct 361
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5973720 ctccatccggttccttcttcccccagggaagggattgcccggcacgtgagtcgttccgct 5973779

                                                                           
Query: 362     atccagtgccttctcccattggggaaaggaaggcggagtaccgcctggcacgacctcgcc 421
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5973780 atccagtgccttctcccattggggaaaggaaggcggagtaccgcctggcacgacctcgcc 5973839

                                                                     
Query: 422     gcacgccacacctcgttcccaacccgcccgttgggtaccatacccgcaccactc 475
               ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5973840 gcacgccacacctcgttcccaacccgcccgttgggtaccatgcccgcaccactc 5973893




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 300     tgctccatccggttcc 315
               ||||||||||||||||
Sbjct: 1096488 tgctccatccggttcc 1096473




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 572     tcatctccaacatcct 587
               ||||||||||||||||
Sbjct: 1161807 tcatctccaacatcct 1161792




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 209     ggcgctcgttccaggt 224
               ||||||||||||||||
Sbjct: 2419745 ggcgctcgttccaggt 2419730




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 415     cctcgccgcacgccac 430
               ||||||||||||||||
Sbjct: 2638102 cctcgccgcacgccac 2638117




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 289     ctgcccgaccatgctc 304
               ||||||||||||||||
Sbjct: 2935665 ctgcccgaccatgctc 2935650




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 382    ggggaaaggaaggcg 396
              |||||||||||||||
Sbjct: 262605 ggggaaaggaaggcg 262619




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 287    tgctgcccgaccatg 301
              |||||||||||||||
Sbjct: 660724 tgctgcccgaccatg 660710




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 333     ggattgcccggcacg 347
               |||||||||||||||
Sbjct: 1165234 ggattgcccggcacg 1165248




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 183     tgtcgacgacggtgg 197
               |||||||||||||||
Sbjct: 1461010 tgtcgacgacggtgg 1461024




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 849     cgggctttctgttgc 863
               |||||||||||||||
Sbjct: 2495614 cgggctttctgttgc 2495600




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 234     cggcgtcctcctggacgtg 252
               |||||| ||||||||||||
Sbjct: 2797100 cggcgtactcctggacgtg 2797118




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 178     ccagctgtcgacgacggtggagt 200
               |||||||||||||| ||| ||||
Sbjct: 3366634 ccagctgtcgacgatggtcgagt 3366612




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 425     cgccacacctcgttc 439
               |||||||||||||||
Sbjct: 3538979 cgccacacctcgttc 3538965




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 153     tggcgatgggcgagc 167
               |||||||||||||||
Sbjct: 3613296 tggcgatgggcgagc 3613282




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 279     cggcgcgatgctgcc 293
               |||||||||||||||
Sbjct: 4106603 cggcgcgatgctgcc 4106617




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 893     ccctcttcaccctct 907
               |||||||||||||||
Sbjct: 4264572 ccctcttcaccctct 4264586




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 79      ggcatcatctgctgg 93
               |||||||||||||||
Sbjct: 4347757 ggcatcatctgctgg 4347771




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 234     cggcgtcctcctgga 248
               |||||||||||||||
Sbjct: 4493091 cggcgtcctcctgga 4493105




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 700     tttttttgcgtttct 714
               |||||||||||||||
Sbjct: 5436224 tttttttgcgtttct 5436210




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 234     cggcgtcctcctggacgtg 252
               |||||||||||| ||||||
Sbjct: 5916941 cggcgtcctcctcgacgtg 5916959




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 842     tgtgcctcgggcttt 856
               |||||||||||||||
Sbjct: 6406544 tgtgcctcgggcttt 6406530




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3226
Number of Sequences: 1
Number of extensions: 3226
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of query: 964
length of database: 6,534,396
effective HSP length: 16
effective length of query: 948
effective length of database: 6,534,380
effective search space: 6194592240
effective search space used: 6194592240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)