BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (967 letters)

Distribution of 50 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           180   2e-45 



>GCTS_68 
          Length = 6534396

 Score =  180 bits (91), Expect = 2e-45
 Identities = 94/95 (98%)
 Strand = Plus / Plus

                                                                           
Query: 125     tacaaggcgcgctcgctggaggaacgccaggcgatgatcgccgcggtggcggggatcagt 184
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6030137 tacaaggcgcgctcgctggaggaacgccaggcgatgatcgccgcggtggcggggatcagt 6030196

                                                  
Query: 185     ccgatcggcctgcgccacgatacgcgcgagaccca 219
               ||||||||||||||||||||| |||||||||||||
Sbjct: 6030197 ccgatcggcctgcgccacgatccgcgcgagaccca 6030231






 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                           
Query: 239     ctgatcgcgctgcccgaggacctcggcttccgccgcaccttcttctcgtgcgagctgctg 298
               ||||||||||||||||||||||||||| |||||||||||  |  |||| |||||||||||
Sbjct: 6030251 ctgatcgcgctgcccgaggacctcggcatccgccgcaccgacgcctcgcgcgagctgctg 6030310

                          
Query: 299     gcggctaagag 309
               ||||| |||||
Sbjct: 6030311 gcggcgaagag 6030321






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 699     gcgcggcttgtccttca 715
               |||||||||||||||||
Sbjct: 1292908 gcgcggcttgtccttca 1292892






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 187     gatcggcctgcgccacg 203
               |||||||||||||||||
Sbjct: 1661405 gatcggcctgcgccacg 1661421






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 243     tcgcgctgcccgaggac 259
               |||||||||||||||||
Sbjct: 2551169 tcgcgctgcccgaggac 2551185






 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 261     tcggcttccgccgcacc 277
               |||||||||||||||||
Sbjct: 2910079 tcggcttccgccgcacc 2910063






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 152    caggcgatgatcgccg 167
              ||||||||||||||||
Sbjct: 183632 caggcgatgatcgccg 183647






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 153     aggcgatgatcgccgcggtg 172
               ||||||||||||||| ||||
Sbjct: 2443490 aggcgatgatcgccgaggtg 2443471






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 132     cgcgctcgctggagga 147
               ||||||||||||||||
Sbjct: 2543813 cgcgctcgctggagga 2543828






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 250     gcccgaggacctcggc 265
               ||||||||||||||||
Sbjct: 2619011 gcccgaggacctcggc 2619026






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 262     cggcttccgccgcacc 277
               ||||||||||||||||
Sbjct: 2844175 cggcttccgccgcacc 2844190






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 154     ggcgatgatcgccgcg 169
               ||||||||||||||||
Sbjct: 2958585 ggcgatgatcgccgcg 2958570






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 154     ggcgatgatcgccgcg 169
               ||||||||||||||||
Sbjct: 3369607 ggcgatgatcgccgcg 3369622






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 190     cggcctgcgccacgat 205
               ||||||||||||||||
Sbjct: 5054377 cggcctgcgccacgat 5054392






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 185     ccgatcggcctgcgcc 200
               ||||||||||||||||
Sbjct: 5766493 ccgatcggcctgcgcc 5766478






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 153     aggcgatgatcgccgc 168
               ||||||||||||||||
Sbjct: 6390483 aggcgatgatcgccgc 6390498






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 187    gatcggcctgcgcca 201
              |||||||||||||||
Sbjct: 109082 gatcggcctgcgcca 109068






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 158    atgatcgccgcggtg 172
              |||||||||||||||
Sbjct: 435053 atgatcgccgcggtg 435039






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 154    ggcgatgatcgccgcggtg 172
              ||||| |||||||||||||
Sbjct: 699130 ggcgacgatcgccgcggtg 699112






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 159    tgatcgccgcggtgg 173
              |||||||||||||||
Sbjct: 886625 tgatcgccgcggtgg 886639






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 289    cgagctgctggcggc 303
              |||||||||||||||
Sbjct: 897068 cgagctgctggcggc 897082






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 251    cccgaggacctcggc 265
              |||||||||||||||
Sbjct: 966272 cccgaggacctcggc 966286






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 156    cgatgatcgccgcgg 170
              |||||||||||||||
Sbjct: 990911 cgatgatcgccgcgg 990925






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 155     gcgatgatcgccgcg 169
               |||||||||||||||
Sbjct: 1234540 gcgatgatcgccgcg 1234526






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 142     ggaggaacgccaggc 156
               |||||||||||||||
Sbjct: 1568375 ggaggaacgccaggc 1568389






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 188     atcggcctgcgccac 202
               |||||||||||||||
Sbjct: 1638618 atcggcctgcgccac 1638632






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 163     cgccgcggtggcggg 177
               |||||||||||||||
Sbjct: 1869961 cgccgcggtggcggg 1869947






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 288     gcgagctgctggcgg 302
               |||||||||||||||
Sbjct: 1916523 gcgagctgctggcgg 1916509






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 143     gaggaacgccaggcg 157
               |||||||||||||||
Sbjct: 2055218 gaggaacgccaggcg 2055232






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 288     gcgagctgctggcgg 302
               |||||||||||||||
Sbjct: 2167918 gcgagctgctggcgg 2167904






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 289     cgagctgctggcggc 303
               |||||||||||||||
Sbjct: 2285573 cgagctgctggcggc 2285559






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 245     gcgctgcccgaggacctcg 263
               ||||||||||| |||||||
Sbjct: 2454651 gcgctgcccgacgacctcg 2454669






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 155     gcgatgatcgccgcg 169
               |||||||||||||||
Sbjct: 2568229 gcgatgatcgccgcg 2568243






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 259     cctcggcttccgccg 273
               |||||||||||||||
Sbjct: 2970984 cctcggcttccgccg 2970998






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 155     gcgatgatcgccgcggtgg 173
               ||||| |||||||||||||
Sbjct: 3135346 gcgatcatcgccgcggtgg 3135364






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 144     aggaacgccaggcga 158
               |||||||||||||||
Sbjct: 3738083 aggaacgccaggcga 3738097






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 186     cgatcggcctgcgcc 200
               |||||||||||||||
Sbjct: 3747953 cgatcggcctgcgcc 3747939






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 154     ggcgatgatcgccgc 168
               |||||||||||||||
Sbjct: 4378599 ggcgatgatcgccgc 4378613






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 257     gacctcggcttccgc 271
               |||||||||||||||
Sbjct: 4717237 gacctcggcttccgc 4717223






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 161     atcgccgcggtggcg 175
               |||||||||||||||
Sbjct: 4795010 atcgccgcggtggcg 4794996






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 162     tcgccgcggtggcgg 176
               |||||||||||||||
Sbjct: 5016200 tcgccgcggtggcgg 5016214






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 160     gatcgccgcggtggc 174
               |||||||||||||||
Sbjct: 5145547 gatcgccgcggtggc 5145533






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 288     gcgagctgctggcgg 302
               |||||||||||||||
Sbjct: 5175635 gcgagctgctggcgg 5175649






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 176     gggatcagtccgatc 190
               |||||||||||||||
Sbjct: 5183738 gggatcagtccgatc 5183724






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 142     ggaggaacgccaggc 156
               |||||||||||||||
Sbjct: 5294995 ggaggaacgccaggc 5295009






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 162     tcgccgcggtggcgg 176
               |||||||||||||||
Sbjct: 5448237 tcgccgcggtggcgg 5448223






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 134     cgctcgctggaggaa 148
               |||||||||||||||
Sbjct: 5703409 cgctcgctggaggaa 5703395






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 138     cgctggaggaacgcc 152
               |||||||||||||||
Sbjct: 5714043 cgctggaggaacgcc 5714057






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 154     ggcgatgatcgccgc 168
               |||||||||||||||
Sbjct: 6208825 ggcgatgatcgccgc 6208839






 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 155     gcgatgatcgccgcggtgg 173
               ||||||| |||||||||||
Sbjct: 6393463 gcgatgagcgccgcggtgg 6393481






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4633
Number of Sequences: 1
Number of extensions: 4633
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of query: 967
length of database: 6,534,396
effective HSP length: 16
effective length of query: 951
effective length of database: 6,534,380
effective search space: 6214195380
effective search space used: 6214195380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)