BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (1264 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           414   e-115 

>GCTS_68 
          Length = 6534396

 Score =  414 bits (209), Expect = e-115
 Identities = 221/225 (98%)
 Strand = Plus / Minus

                                                                           
Query: 113     tactcaatatcgcctcggtggccgccttccagcccggcgcctggatgagcaactactacg 172
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523947 tactcaatatcgcctcggtggccgccttccagcccggcgcctggatgagcaactactacg 6523888

                                                                           
Query: 173     ccagcaaggcctacgtcctgcacttctcggaaggcttgcgggaagaactgaaagggcgcg 232
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523887 ccagcaaggcctacgtcctgcacttctcggaaggcttgcgggaagaactgaaagggcgcg 6523828

                                                                           
Query: 233     gcgtcaaggtctcggtgctgtgccctgggccaacccgtacggcattcttccgggaagccg 292
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523827 gcgtcaaggtctcggtgctgtgccctgggccaacccgtacggcattcttccgggaagccg 6523768

                                                            
Query: 293     gtatgcggctcggcaagttcaaccggagcaagctgatgatgaccc 337
               | ||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 6523767 ggatgcggctcggcaggctcgaccggagcaagctgatgatgaccc 6523723




 Score = 34.2 bits (17), Expect = 0.41
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 133     gccgccttccagcccggcgcc 153
               |||||||||||||| ||||||
Sbjct: 6184429 gccgccttccagccgggcgcc 6184449




 Score = 32.2 bits (16), Expect = 1.6
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 253     tgccctgggccaaccc 268
               ||||||||||||||||
Sbjct: 2809466 tgccctgggccaaccc 2809481




 Score = 32.2 bits (16), Expect = 1.6
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 138     cttccagcccggcgcc 153
               ||||||||||||||||
Sbjct: 3336366 cttccagcccggcgcc 3336381




 Score = 32.2 bits (16), Expect = 1.6
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 1236    aaaacgccgcaaccgc 1251
               ||||||||||||||||
Sbjct: 3352708 aaaacgccgcaaccgc 3352723




 Score = 32.2 bits (16), Expect = 1.6
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 131     tggccgccttccagcc 146
               ||||||||||||||||
Sbjct: 4470585 tggccgccttccagcc 4470570




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 140    tccagcccggcgcct 154
              |||||||||||||||
Sbjct: 169299 tccagcccggcgcct 169285




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 121    atcgcctcggtggcc 135
              |||||||||||||||
Sbjct: 315914 atcgcctcggtggcc 315928




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 238     aaggtctcggtgctg 252
               |||||||||||||||
Sbjct: 1333277 aaggtctcggtgctg 1333291




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 142     cagcccggcgcctgg 156
               |||||||||||||||
Sbjct: 1398277 cagcccggcgcctgg 1398291




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 126     ctcggtggccgcctt 140
               |||||||||||||||
Sbjct: 1463431 ctcggtggccgcctt 1463417




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 125     cctcggtggccgcct 139
               |||||||||||||||
Sbjct: 2054479 cctcggtggccgcct 2054493




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 116     tcaatatcgcctcggtggc 134
               |||||| ||||||||||||
Sbjct: 2213443 tcaataccgcctcggtggc 2213425




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 1237    aaacgccgcaaccgc 1251
               |||||||||||||||
Sbjct: 2351782 aaacgccgcaaccgc 2351796




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 140     tccagcccggcgcct 154
               |||||||||||||||
Sbjct: 3446348 tccagcccggcgcct 3446334




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 327     gatgatgacccagaa 341
               |||||||||||||||
Sbjct: 4243298 gatgatgacccagaa 4243284




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 128     cggtggccgccttccagcc 146
               |||||||||||| ||||||
Sbjct: 4446323 cggtggccgcctgccagcc 4446305




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 228     gcgcggcgtcaaggt 242
               |||||||||||||||
Sbjct: 4449690 gcgcggcgtcaaggt 4449676




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 280     ttccgggaagccggt 294
               |||||||||||||||
Sbjct: 4983585 ttccgggaagccggt 4983571




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 135     cgccttccagcccggcgcc 153
               ||||||||||| |||||||
Sbjct: 5162646 cgccttccagcgcggcgcc 5162628




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 1244    gcaaccgcgtctaca 1258
               |||||||||||||||
Sbjct: 5307478 gcaaccgcgtctaca 5307492




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 295     atgcggctcggcaag 309
               |||||||||||||||
Sbjct: 6197800 atgcggctcggcaag 6197814




 Score = 30.2 bits (15), Expect = 6.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 125     cctcggtggccgcct 139
               |||||||||||||||
Sbjct: 6199435 cctcggtggccgcct 6199449




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3649
Number of Sequences: 1
Number of extensions: 3649
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of query: 1264
length of database: 6,534,396
effective HSP length: 17
effective length of query: 1247
effective length of database: 6,534,379
effective search space: 8148370613
effective search space used: 8148370613
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)