BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (999 letters)

Distribution of 58 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           416   e-116 



>GCTS_68 
          Length = 6534396

 Score =  416 bits (210), Expect = e-116
 Identities = 228/234 (97%)
 Strand = Plus / Plus

                                                                           
Query: 127     tagtcctcgtccaggctcatggcctggtccgcgcgcttctcgcggacccgcgcgacgccc 186
               ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5896169 tagtcctcgtccaggctcagggcctggtccgcgcgcttctcgcggacccgcgcgacgccc 5896228

                                                                           
Query: 187     accgcggcgtattcgccgaggccgacgcgctcggtcagcatgcggaacgcctggctgccc 246
               |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 5896229 accgcggcgtattcgccgaggccgtcgcgctcggtcagcaggcggaacgcctggctgccc 5896288

                                                                           
Query: 247     agggccaccggcgcgcggctctcgaaggcggcattgtcgtcgcgcacttcctgcacctgg 306
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5896289 agggccaccggcgcgcggctctcgaaggcggcattgtcgtcgcgcacttcctgcacctgg 5896348

                                                                     
Query: 307     ctgacgtagtgggcgccgtcgagggcctcgccctcctctaccgtgtcccgggtg 360
               ||||||||| |||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 5896349 ctgacgtagcgggcgccgccgagggcctcgccctcctctaccgtgtcgcgggtg 5896402






 Score = 36.2 bits (18), Expect = 0.083
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 321    gccgtcgagggcctcgcc 338
              ||||||||||||||||||
Sbjct: 158278 gccgtcgagggcctcgcc 158295






 Score = 36.2 bits (18), Expect = 0.083
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                         
Query: 186     caccgcggcgtattcgccgaggccga 211
               |||||||||||| ||||||| |||||
Sbjct: 1828479 caccgcggcgtactcgccgaagccga 1828454






 Score = 36.2 bits (18), Expect = 0.083
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 199     tcgccgaggccgacgcgctcgg 220
               ||||||||||| ||||||||||
Sbjct: 5660464 tcgccgaggcccacgcgctcgg 5660485






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 379    aggacggggtggacaa 394
              ||||||||||||||||
Sbjct: 534977 aggacggggtggacaa 534992






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 315     gtgggcgccgtcgagggcct 334
               ||||||| ||||||||||||
Sbjct: 1489905 gtgggcggcgtcgagggcct 1489886






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 179     cgacgcccaccgcggc 194
               ||||||||||||||||
Sbjct: 1613721 cgacgcccaccgcggc 1613706






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 714     ttcccctattttgtat 729
               ||||||||||||||||
Sbjct: 2483529 ttcccctattttgtat 2483514






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 205     aggccgacgcgctcgg 220
               ||||||||||||||||
Sbjct: 2672598 aggccgacgcgctcgg 2672583






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 176     gcgcgacgcccaccgc 191
               ||||||||||||||||
Sbjct: 3099924 gcgcgacgcccaccgc 3099909






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 132     ctcgtccaggctcatggcct 151
               |||| |||||||||||||||
Sbjct: 3214872 ctcgaccaggctcatggcct 3214853






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 290     gcacttcctgcacctg 305
               ||||||||||||||||
Sbjct: 3400273 gcacttcctgcacctg 3400288






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 155     ccgcgcgcttctcgcg 170
               ||||||||||||||||
Sbjct: 3593044 ccgcgcgcttctcgcg 3593029






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 315     gtgggcgccgtcgagggcct 334
               ||||||| ||||||||||||
Sbjct: 3930156 gtgggcggcgtcgagggcct 3930137






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 199     tcgccgaggccgacgc 214
               ||||||||||||||||
Sbjct: 4954953 tcgccgaggccgacgc 4954968






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 199     tcgccgaggccgacgc 214
               ||||||||||||||||
Sbjct: 5163944 tcgccgaggccgacgc 5163929






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 190     gcggcgtattcgccga 205
               ||||||||||||||||
Sbjct: 5386946 gcggcgtattcgccga 5386931






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 194     cgtattcgccgaggccgacg 213
               ||||||||||||||| ||||
Sbjct: 5898451 cgtattcgccgaggcggacg 5898470






 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 198     ttcgccgaggccgacg 213
               ||||||||||||||||
Sbjct: 6176819 ttcgccgaggccgacg 6176834






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 243    gcccagggccaccggcgcg 261
              ||||||||||||| |||||
Sbjct: 135347 gcccagggccaccagcgcg 135329






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 316    tgggcgccgtcgagg 330
              |||||||||||||||
Sbjct: 507707 tgggcgccgtcgagg 507721






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 145    atggcctggtccgcg 159
              |||||||||||||||
Sbjct: 567311 atggcctggtccgcg 567325






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 165    ctcgcggacccgcgcgacg 183
              ||||| |||||||||||||
Sbjct: 788296 ctcgccgacccgcgcgacg 788314






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 236    cctggctgcccaggg 250
              |||||||||||||||
Sbjct: 886278 cctggctgcccaggg 886292






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 252    caccggcgcgcggct 266
              |||||||||||||||
Sbjct: 921386 caccggcgcgcggct 921372






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 155     ccgcgcgcttctcgc 169
               |||||||||||||||
Sbjct: 1093278 ccgcgcgcttctcgc 1093292






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 261     gcggctctcgaaggc 275
               |||||||||||||||
Sbjct: 1174584 gcggctctcgaaggc 1174570






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 318     ggcgccgtcgagggc 332
               |||||||||||||||
Sbjct: 1566286 ggcgccgtcgagggc 1566300






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 232     aacgcctggctgcccaggg 250
               |||||||||||| ||||||
Sbjct: 1651705 aacgcctggctggccaggg 1651687






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 199     tcgccgaggccgacg 213
               |||||||||||||||
Sbjct: 1878788 tcgccgaggccgacg 1878802






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 261     gcggctctcgaaggc 275
               |||||||||||||||
Sbjct: 1938682 gcggctctcgaaggc 1938668






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 249     ggccaccggcgcgcg 263
               |||||||||||||||
Sbjct: 2066611 ggccaccggcgcgcg 2066597






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 155     ccgcgcgcttctcgc 169
               |||||||||||||||
Sbjct: 2171401 ccgcgcgcttctcgc 2171415






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 201     gccgaggccgacgcgctcg 219
               |||||||||||| ||||||
Sbjct: 2594233 gccgaggccgactcgctcg 2594215






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 250     gccaccggcgcgcgg 264
               |||||||||||||||
Sbjct: 2680672 gccaccggcgcgcgg 2680658






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 207     gccgacgcgctcggtcagc 225
               ||||| |||||||||||||
Sbjct: 2733045 gccgaagcgctcggtcagc 2733027






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 147     ggcctggtccgcgcgcttc 165
               ||||| |||||||||||||
Sbjct: 2968501 ggccttgtccgcgcgcttc 2968519






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 198     ttcgccgaggccgac 212
               |||||||||||||||
Sbjct: 3000280 ttcgccgaggccgac 3000294






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 243     gcccagggccaccgg 257
               |||||||||||||||
Sbjct: 3202576 gcccagggccaccgg 3202562






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 283     tcgtcgcgcacttcc 297
               |||||||||||||||
Sbjct: 3414719 tcgtcgcgcacttcc 3414733






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 319     gcgccgtcgagggcctcgc 337
               ||||||||||| |||||||
Sbjct: 3974772 gcgccgtcgagcgcctcgc 3974754






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 236     cctggctgcccagggccac 254
               ||||| |||||||||||||
Sbjct: 3991078 cctgggtgcccagggccac 3991096






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 293     cttcctgcacctggc 307
               |||||||||||||||
Sbjct: 4285909 cttcctgcacctggc 4285895






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 331     gcctcgccctcctct 345
               |||||||||||||||
Sbjct: 4303099 gcctcgccctcctct 4303113






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 208     ccgacgcgctcggtcagca 226
               ||||||||||||| |||||
Sbjct: 4438423 ccgacgcgctcgggcagca 4438441






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 231     gaacgcctggctgcc 245
               |||||||||||||||
Sbjct: 4718312 gaacgcctggctgcc 4718326






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 178     gcgacgcccaccgcggcgt 196
               |||||||||||| ||||||
Sbjct: 5007382 gcgacgcccaccacggcgt 5007400






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 159     gcgcttctcgcggacccgc 177
               |||||| ||||||||||||
Sbjct: 5013701 gcgcttgtcgcggacccgc 5013719






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 172     acccgcgcgacgccc 186
               |||||||||||||||
Sbjct: 5288619 acccgcgcgacgccc 5288605






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 282     gtcgtcgcgcacttc 296
               |||||||||||||||
Sbjct: 5415975 gtcgtcgcgcacttc 5415989






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 200     cgccgaggccgacgcgctc 218
               |||||||||||| ||||||
Sbjct: 5666852 cgccgaggccgaagcgctc 5666834






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 134     cgtccaggctcatggcctg 152
               |||||||||||| ||||||
Sbjct: 5903388 cgtccaggctcagggcctg 5903370






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 282     gtcgtcgcgcacttcctgc 300
               |||||||||||| ||||||
Sbjct: 5934839 gtcgtcgcgcacctcctgc 5934821






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 200     cgccgaggccgacgc 214
               |||||||||||||||
Sbjct: 5991612 cgccgaggccgacgc 5991598






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 210     gacgcgctcggtcag 224
               |||||||||||||||
Sbjct: 6269933 gacgcgctcggtcag 6269919






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 199     tcgccgaggccgacg 213
               |||||||||||||||
Sbjct: 6339279 tcgccgaggccgacg 6339293






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 237     ctggctgcccagggc 251
               |||||||||||||||
Sbjct: 6408507 ctggctgcccagggc 6408493






 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 324     gtcgagggcctcgcc 338
               |||||||||||||||
Sbjct: 6432568 gtcgagggcctcgcc 6432582






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5932
Number of Sequences: 1
Number of extensions: 5932
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of query: 999
length of database: 6,534,396
effective HSP length: 17
effective length of query: 982
effective length of database: 6,534,379
effective search space: 6416760178
effective search space used: 6416760178
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)