BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (1010 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           224   2e-58 

>GCTS_68 
          Length = 6534396

 Score =  224 bits (113), Expect = 2e-58
 Identities = 122/125 (97%)
 Strand = Plus / Minus

                                                                           
Query: 147     tatgatctgactaacaggtcacgaagaataggaacagttgcggagaattgcgttggatca 206
               |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 5672257 tatgatctgactaacaggtcaacaagaataggaacagttgcggagaattgcgttggatca 5672198

                                                                           
Query: 207     ccggggtgtgtttccgaactgtatgggttgtttcggtgcgtaactgtaccgctctgcacc 266
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5672197 ccggggtgtgtttccgaactgtatgggttgtttcggtgcgtaactgtaccgctctgcacc 5672138

                    
Query: 267     atcat 271
                ||||
Sbjct: 5672137 gtcat 5672133




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 557     agcgcctcgccgactg 572
               ||||||||||||||||
Sbjct: 3788836 agcgcctcgccgactg 3788821




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 220     ccgaactgtatgggtt 235
               ||||||||||||||||
Sbjct: 4016660 ccgaactgtatgggtt 4016675




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 577     tctttttttgcccgcg 592
               ||||||||||||||||
Sbjct: 4819923 tctttttttgcccgcg 4819938




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 557     agcgcctcgccgactg 572
               ||||||||||||||||
Sbjct: 5735349 agcgcctcgccgactg 5735364




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 609     ctattctctatatat 623
               |||||||||||||||
Sbjct: 2921842 ctattctctatatat 2921828




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 322     cggccggtggccgct 336
               |||||||||||||||
Sbjct: 6365267 cggccggtggccgct 6365281




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1606
Number of Sequences: 1
Number of extensions: 1606
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 1010
length of database: 6,534,396
effective HSP length: 17
effective length of query: 993
effective length of database: 6,534,379
effective search space: 6488638347
effective search space used: 6488638347
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)