BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (1005 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           387   e-107 

>GCTS_68 
          Length = 6534396

 Score =  387 bits (195), Expect = e-107
 Identities = 264/287 (91%)
 Strand = Plus / Minus

                                                                          
Query: 178    ccggcgctcgaaggacagaaaatcggaagcgggggagaaatgcgcgctcatcgcacccac 237
              |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 401193 ccggcgctcgaaggacagaaaatcggaagcggtggagaaatgcgcgctcagcgcacccac 401134

                                                                          
Query: 238    gaaacccaggcagagcgggacgaccacccagagaataaggaagggcccgcagcattccta 297
              ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 401133 gaaacccaggcagagcgggacgaccacccagagaagaaggaagggcccgcagcattccta 401074

                                                                          
Query: 298    ggaaagctgcacgacctgggcggcacccgaaaccttggaacggctttatcgcccgtcccg 357
              ||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||| ||||
Sbjct: 401073 ggaaagctgcacgacctggccggcacccgaaaccatggcacggctttttcgcccgccccg 401014

                                                                          
Query: 358    tagaggggatgcctgaacgctcgcctgaaaagacaaagcccccggaacaacaggcatgcg 417
               |||||||||||| ||||||||||| ||||||||||||||||||||||  ||||||| | 
Sbjct: 401013 cagaggggatgcccgaacgctcgccagaaaagacaaagcccccggaacgccaggcattcc 400954

                                                             
Query: 418    atgagcttttcttctatgttatgggggagagacagggttttgaaccc 464
              | ||||||| ||  ||||| |||| ||||||| |||| |||||||||
Sbjct: 400953 aggagctttgctcatatgtaatggcggagagatagggatttgaaccc 400907




 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 131    tactaagaagaaccgcaccgaccat 155
              |||||||||||||||||||||||||
Sbjct: 401240 tactaagaagaaccgcaccgaccat 401216




 Score = 34.2 bits (17), Expect = 0.33
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 603    cgcgggttgctgcggtt 619
              |||||||||||||||||
Sbjct: 955585 cgcgggttgctgcggtt 955601




 Score = 34.2 bits (17), Expect = 0.33
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 602     tcgcgggttgctgcggt 618
               |||||||||||||||||
Sbjct: 5864537 tcgcgggttgctgcggt 5864553




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 309     cgacctgggcggcacc 324
               ||||||||||||||||
Sbjct: 3467120 cgacctgggcggcacc 3467105




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 603     cgcgggttgctgcggt 618
               ||||||||||||||||
Sbjct: 5118836 cgcgggttgctgcggt 5118851




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 311    acctgggcggcaccc 325
              |||||||||||||||
Sbjct: 787100 acctgggcggcaccc 787086




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 384     gaaaagacaaagccc 398
               |||||||||||||||
Sbjct: 1049885 gaaaagacaaagccc 1049871




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 394     agcccccggaacaacaggc 412
               ||||| |||||||||||||
Sbjct: 1627041 agcccgcggaacaacaggc 1627023




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 301     aagctgcacgacctgggcg 319
               ||||||| |||||||||||
Sbjct: 3237144 aagctgcccgacctgggcg 3237126




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 398     cccggaacaacaggc 412
               |||||||||||||||
Sbjct: 3259985 cccggaacaacaggc 3259999




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 309     cgacctgggcggcac 323
               |||||||||||||||
Sbjct: 4093654 cgacctgggcggcac 4093668




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 232     acccacgaaacccag 246
               |||||||||||||||
Sbjct: 5023435 acccacgaaacccag 5023449




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 302     agctgcacgacctgg 316
               |||||||||||||||
Sbjct: 5225593 agctgcacgacctgg 5225607




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 259     gaccacccagagaat 273
               |||||||||||||||
Sbjct: 5489091 gaccacccagagaat 5489105




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 309     cgacctgggcggcac 323
               |||||||||||||||
Sbjct: 5719542 cgacctgggcggcac 5719528




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 301     aagctgcacgacctg 315
               |||||||||||||||
Sbjct: 6028952 aagctgcacgacctg 6028966




 Score = 30.2 bits (15), Expect = 5.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 304     ctgcacgacctgggc 318
               |||||||||||||||
Sbjct: 6456568 ctgcacgacctgggc 6456554




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2224
Number of Sequences: 1
Number of extensions: 2224
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 1005
length of database: 6,534,396
effective HSP length: 17
effective length of query: 988
effective length of database: 6,534,379
effective search space: 6455966452
effective search space used: 6455966452
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)