BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (946 letters)

Distribution of 35 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           256   5e-68 



>GCTS_68 
          Length = 6534396

 Score =  256 bits (129), Expect = 5e-68
 Identities = 162/173 (93%)
 Strand = Plus / Plus

                                                                          
Query: 175    caccttgatgttcgagggcttctcgtggccgatcggtaccagccagttcagcgaccaact 234
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546048 caccttgatgttcgagggcttctcgtggccgatcggtaccagccagttcagcgaccaact 546107

                                                                          
Query: 235    gccgcgcgcctggtgcgtgtagctgtcgcgcaccggcttgttcggctcgacgccgccttc 294
              ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 546108 gccgcgcgcctggcgcgtgtagctgtagcgcaccggcttgttcggctcgacgccgccttc 546167

                                                                   
Query: 295    gaggcggatggttctgccttcgttggtgatgctgttggtgttgtctatggcca 347
              ||||||||||||   ||| ||| |||||||||||  || |||||| |||||||
Sbjct: 546168 gaggcggatggtcaggccgtcgctggtgatgctgagggcgttgtcgatggcca 546220






 Score = 36.2 bits (18), Expect = 0.078
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 268     cggcttgttcggctcgacgccg 289
               ||||||||||||||||| ||||
Sbjct: 3884209 cggcttgttcggctcgaggccg 3884230






 Score = 34.2 bits (17), Expect = 0.31
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 288     cgccttcgaggcggatg 304
               |||||||||||||||||
Sbjct: 3946319 cgccttcgaggcggatg 3946303






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 276    tcggctcgacgccgcc 291
              ||||||||||||||||
Sbjct: 151877 tcggctcgacgccgcc 151862






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 274     gttcggctcgacgccg 289
               ||||||||||||||||
Sbjct: 1094618 gttcggctcgacgccg 1094603






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 383     gtgccgtgctgcccgccctg 402
               |||||||||||| |||||||
Sbjct: 1607901 gtgccgtgctgcgcgccctg 1607882






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 379     cttggtgccgtgctgc 394
               ||||||||||||||||
Sbjct: 2270845 cttggtgccgtgctgc 2270860






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 286     gccgccttcgaggcgg 301
               ||||||||||||||||
Sbjct: 2728343 gccgccttcgaggcgg 2728328






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 237     cgcgcgcctggtgcgt 252
               ||||||||||||||||
Sbjct: 2983767 cgcgcgcctggtgcgt 2983782






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 88      tctgccgcccggggag 103
               ||||||||||||||||
Sbjct: 4519758 tctgccgcccggggag 4519743






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 235     gccgcgcgcctggtgc 250
               ||||||||||||||||
Sbjct: 4971821 gccgcgcgcctggtgc 4971836






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 384     tgccgtgctgcccgcc 399
               ||||||||||||||||
Sbjct: 5899247 tgccgtgctgcccgcc 5899262






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 458    gtttttcttgtcgtg 472
              |||||||||||||||
Sbjct: 165390 gtttttcttgtcgtg 165404






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 569    cagcctgttccacttccgt 587
              ||||||||||| |||||||
Sbjct: 758453 cagcctgttccgcttccgt 758471






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 309     tgccttcgttggtga 323
               |||||||||||||||
Sbjct: 1200843 tgccttcgttggtga 1200829






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 232     actgccgcgcgcctggtgc 250
               ||||||||||| |||||||
Sbjct: 1213273 actgccgcgcgtctggtgc 1213291






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 278     ggctcgacgccgccttcga 296
               |||||||||||| ||||||
Sbjct: 2104284 ggctcgacgccggcttcga 2104302






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 723     tttttaatttccttt 737
               |||||||||||||||
Sbjct: 2232243 tttttaatttccttt 2232229






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 927     ttttgttttttccct 941
               |||||||||||||||
Sbjct: 2900314 ttttgttttttccct 2900300






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 262     gcgcaccggcttgtt 276
               |||||||||||||||
Sbjct: 2943133 gcgcaccggcttgtt 2943119






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 234     tgccgcgcgcctggtgcgt 252
               ||||| |||||||||||||
Sbjct: 3140304 tgccgagcgcctggtgcgt 3140322






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 391     ctgcccgccctggtc 405
               |||||||||||||||
Sbjct: 3592275 ctgcccgccctggtc 3592289






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 282     cgacgccgccttcga 296
               |||||||||||||||
Sbjct: 3777221 cgacgccgccttcga 3777235






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 781     tgtcctgggtgctgg 795
               |||||||||||||||
Sbjct: 4007935 tgtcctgggtgctgg 4007949






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 275     ttcggctcgacgccg 289
               |||||||||||||||
Sbjct: 4029038 ttcggctcgacgccg 4029024






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 237     cgcgcgcctggtgcg 251
               |||||||||||||||
Sbjct: 4051560 cgcgcgcctggtgcg 4051546






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 370     cttcttgatcttggt 384
               |||||||||||||||
Sbjct: 4202950 cttcttgatcttggt 4202964






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 812     tccttctccctcccccagt 830
               ||||||||||||| |||||
Sbjct: 4212925 tccttctccctccaccagt 4212907






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 784     cctgggtgctggacg 798
               |||||||||||||||
Sbjct: 4507521 cctgggtgctggacg 4507507






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 257     ctgtcgcgcaccggc 271
               |||||||||||||||
Sbjct: 4970717 ctgtcgcgcaccggc 4970731






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 214     cagccagttcagcga 228
               |||||||||||||||
Sbjct: 5152791 cagccagttcagcga 5152777






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 369     ccttcttgatcttgg 383
               |||||||||||||||
Sbjct: 5568513 ccttcttgatcttgg 5568527






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 278     ggctcgacgccgccttcga 296
               |||||||||||| ||||||
Sbjct: 5845343 ggctcgacgccggcttcga 5845325






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 214     cagccagttcagcga 228
               |||||||||||||||
Sbjct: 6236482 cagccagttcagcga 6236468






 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 237     cgcgcgcctggtgcg 251
               |||||||||||||||
Sbjct: 6419061 cgcgcgcctggtgcg 6419047






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4119
Number of Sequences: 1
Number of extensions: 4119
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of query: 946
length of database: 6,534,396
effective HSP length: 16
effective length of query: 930
effective length of database: 6,534,380
effective search space: 6076973400
effective search space used: 6076973400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)