BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (989 letters)

Distribution of 53 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           470   e-132 

>GCTS_68 
          Length = 6534396

 Score =  470 bits (237), Expect = e-132
 Identities = 244/245 (99%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                           
Query: 128     tacatgtcagatggaaaccgatttgagacgtacgtctcaaatgcggcctgacaactcaga 187
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5828948 tacatgtcagatggaaaccgatttgagacgtacgtctcaaatgcggcctgacaactcaga 5828889

                                                                           
Query: 188     cagttgccaattgccggcgcagcgtctccaacaccggcgccgaggcaggacgcacgccac 247
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5828888 cagttgccaattgccggcgcagcgtctccaacaccggcgccgaggcaggacgcacgccac 5828829

                                                                           
Query: 248     gccagaggaagaatgcctcggcggcctgctccaccagcatgcccaggccatccagggtac 307
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5828828 gccagaggaagaatgcctcggcggcctgctccaccagcatgcccaggccatccagggtac 5828769

                                                                           
Query: 308     gcgccgcaccgcgttcgtgcggcccagcggttgaaggcggtcggttccttggcatacatc 367
               ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5828768 gcgccgcaccgcgttcg-gcggcccagcggttgaaggcggtcggttccttggcatacatc 5828710

                    
Query: 368     atgtc 372
               |||||
Sbjct: 5828709 atgtc 5828705




 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 148     atttgagacgtacgtctcaaat 169
               ||||||||||||||||||||||
Sbjct: 5828907 atttgagacgtacgtctcaaat 5828928




 Score = 36.2 bits (18), Expect = 0.082
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                         
Query: 267     ggcggcctgctccaccagcatgccca 292
               ||||||| |||||||||||| |||||
Sbjct: 1830799 ggcggccagctccaccagcaggccca 1830824




 Score = 36.2 bits (18), Expect = 0.082
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 331     ccagcggttgaaggcggt 348
               ||||||||||||||||||
Sbjct: 4477737 ccagcggttgaaggcggt 4477720




 Score = 36.2 bits (18), Expect = 0.082
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 254     ggaagaatgcctcggcgg 271
               ||||||||||||||||||
Sbjct: 5952052 ggaagaatgcctcggcgg 5952069




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 165    caaatgcggcctgaca 180
              ||||||||||||||||
Sbjct: 216182 caaatgcggcctgaca 216197




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 279    caccagcatgcccagg 294
              ||||||||||||||||
Sbjct: 447869 caccagcatgcccagg 447854




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 909     cgcgcatcctgccggg 924
               ||||||||||||||||
Sbjct: 1798488 cgcgcatcctgccggg 1798503




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 263     cctcggcggcctgctc 278
               ||||||||||||||||
Sbjct: 1832600 cctcggcggcctgctc 1832615




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 272     cctgctccaccagcat 287
               ||||||||||||||||
Sbjct: 2213789 cctgctccaccagcat 2213804




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 269     cggcctgctccaccag 284
               ||||||||||||||||
Sbjct: 2661134 cggcctgctccaccag 2661149




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 263     cctcggcggcctgctc 278
               ||||||||||||||||
Sbjct: 2817487 cctcggcggcctgctc 2817472




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 221     ccggcgccgaggcagg 236
               ||||||||||||||||
Sbjct: 3409486 ccggcgccgaggcagg 3409471




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 220     accggcgccgaggcag 235
               ||||||||||||||||
Sbjct: 3662389 accggcgccgaggcag 3662374




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 283     agcatgcccaggccat 298
               ||||||||||||||||
Sbjct: 4576194 agcatgcccaggccat 4576209




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 283     agcatgcccaggccat 298
               ||||||||||||||||
Sbjct: 4591708 agcatgcccaggccat 4591723




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 263     cctcggcggcctgctc 278
               ||||||||||||||||
Sbjct: 4719194 cctcggcggcctgctc 4719209




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 269     cggcctgctccaccag 284
               ||||||||||||||||
Sbjct: 5444035 cggcctgctccaccag 5444050




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 262     gcctcggcggcctgct 277
               ||||||||||||||||
Sbjct: 5845991 gcctcggcggcctgct 5846006




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 262     gcctcggcggcctgct 277
               ||||||||||||||||
Sbjct: 5878307 gcctcggcggcctgct 5878292




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 270     ggcctgctccaccagc 285
               ||||||||||||||||
Sbjct: 5896104 ggcctgctccaccagc 5896089




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                            
Query: 219   caccggcgccgaggc 233
             |||||||||||||||
Sbjct: 31218 caccggcgccgaggc 31204




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 219    caccggcgccgaggc 233
              |||||||||||||||
Sbjct: 266554 caccggcgccgaggc 266568




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 280    accagcatgcccagg 294
              |||||||||||||||
Sbjct: 522100 accagcatgcccagg 522114




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 263    cctcggcggcctgct 277
              |||||||||||||||
Sbjct: 538972 cctcggcggcctgct 538958




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 195     caattgccggcgcag 209
               |||||||||||||||
Sbjct: 1287499 caattgccggcgcag 1287485




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 263     cctcggcggcctgct 277
               |||||||||||||||
Sbjct: 1386285 cctcggcggcctgct 1386271




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 217     aacaccggcgccgag 231
               |||||||||||||||
Sbjct: 1519252 aacaccggcgccgag 1519238




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 437     gtcagtacgtcgcgtcggg 455
               |||||||||||||| ||||
Sbjct: 1823691 gtcagtacgtcgcgccggg 1823673




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 193     gccaattgccggcgcagcg 211
               |||| ||||||||||||||
Sbjct: 2457724 gccagttgccggcgcagcg 2457706




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 278     ccaccagcatgccca 292
               |||||||||||||||
Sbjct: 2517578 ccaccagcatgccca 2517564




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 264     ctcggcggcctgctc 278
               |||||||||||||||
Sbjct: 2520291 ctcggcggcctgctc 2520305




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 910     gcgcatcctgccggg 924
               |||||||||||||||
Sbjct: 3057979 gcgcatcctgccggg 3057993




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 748     cggtgatgaagatgc 762
               |||||||||||||||
Sbjct: 3315207 cggtgatgaagatgc 3315193




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 264     ctcggcggcctgctc 278
               |||||||||||||||
Sbjct: 3385455 ctcggcggcctgctc 3385441




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 273     ctgctccaccagcatgccc 291
               |||| ||||||||||||||
Sbjct: 3435986 ctgcgccaccagcatgccc 3435968




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 881     tttcttcacttcttc 895
               |||||||||||||||
Sbjct: 3889937 tttcttcacttcttc 3889923




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 375     catcatcggcaggcc 389
               |||||||||||||||
Sbjct: 4054256 catcatcggcaggcc 4054270




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 219     caccggcgccgaggc 233
               |||||||||||||||
Sbjct: 4165964 caccggcgccgaggc 4165978




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 498     aggtcgttcgctcaa 512
               |||||||||||||||
Sbjct: 4191462 aggtcgttcgctcaa 4191448




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 279     caccagcatgcccag 293
               |||||||||||||||
Sbjct: 4234908 caccagcatgcccag 4234894




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 264     ctcggcggcctgctc 278
               |||||||||||||||
Sbjct: 4448675 ctcggcggcctgctc 4448661




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 263     cctcggcggcctgct 277
               |||||||||||||||
Sbjct: 4470454 cctcggcggcctgct 4470468




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 212     tctccaacaccggcg 226
               |||||||||||||||
Sbjct: 4753724 tctccaacaccggcg 4753738




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 219     caccggcgccgaggc 233
               |||||||||||||||
Sbjct: 4929761 caccggcgccgaggc 4929747




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 221     ccggcgccgaggcag 235
               |||||||||||||||
Sbjct: 5219223 ccggcgccgaggcag 5219237




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 266     cggcggcctgctcca 280
               |||||||||||||||
Sbjct: 5895167 cggcggcctgctcca 5895181




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 262     gcctcggcggcctgc 276
               |||||||||||||||
Sbjct: 5971327 gcctcggcggcctgc 5971313




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 263     cctcggcggcctgct 277
               |||||||||||||||
Sbjct: 6011185 cctcggcggcctgct 6011171




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 272     cctgctccaccagca 286
               |||||||||||||||
Sbjct: 6042671 cctgctccaccagca 6042657




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 264     ctcggcggcctgctc 278
               |||||||||||||||
Sbjct: 6070080 ctcggcggcctgctc 6070066




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 272     cctgctccaccagca 286
               |||||||||||||||
Sbjct: 6094298 cctgctccaccagca 6094284




 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 263     cctcggcggcctgct 277
               |||||||||||||||
Sbjct: 6482433 cctcggcggcctgct 6482447




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5021
Number of Sequences: 1
Number of extensions: 5021
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of query: 989
length of database: 6,534,396
effective HSP length: 17
effective length of query: 972
effective length of database: 6,534,379
effective search space: 6351416388
effective search space used: 6351416388
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)