BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (1023 letters)

Distribution of 59 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           575   e-164 

>GCTS_68 
          Length = 6534396

 Score =  575 bits (290), Expect = e-164
 Identities = 384/410 (93%), Gaps = 4/410 (0%)
 Strand = Plus / Plus

                                                                           
Query: 125     taggtgtccggcttgaacgggccttccacgctcacgccgatgtactcggcctgtttcggg 184
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6298809 taggtgtccggcttgaacgggccttccacgctcacgccgatgtactcggcctgtttcggg 6298868

                                                                           
Query: 185     gtcagctgggtgaccacgccgccgaagcccttgaccatctccagggccacttcctcgtcg 244
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6298869 gtcagctgggtgaccacgccgccgaagcccttgaccatctccagggccacttcctcgtcg 6298928

                                                                           
Query: 245     agcttcttcggcagcacttcgacgctcaggcgcttggtcttctcggcggccggtaggtcg 304
               ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 6298929 agcttcttcggcagcacttcgacgctcaggcgcttggccttctcggcggccggcaggtcg 6298988

                                                                           
Query: 305     gcgtacttctgctcgaacaggtggatctgcgccagtacctggttggcgaaggaaccgtcc 364
               ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6298989 gcgtacttctgctcgaacaggtggatctgcgccagcacctggttggcgaaggaaccgtcc 6299048

                                                                           
Query: 365     atgatccggctcggatggccggttgcgttgcccaggttgaccagggggtccttcag-gag 423
               ||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||
Sbjct: 6299049 atgatccggctcggatggccggttgcgttgcccaggttgaccaggcgg-ccctcagcgag 6299107

                                                                           
Query: 424     -aggatcaggtagtcgtcggttggacacgtccaaactgtccttgccgggacgggggatct 482
                ||||||||||||||||| |||| || |||| |||| |||||||||||  ||| ||||||
Sbjct: 6299108 aaggatcaggtagtcgtc-gttgtacgcgtcgaaaccgtccttgccggtgcggtggatct 6299166

                                                                 
Query: 483     agcgtacctgctggctgacctctttcccggcacagttcttgcgtatgaag 532
                | | |||||| |  ||||||||| || ||| ||||||||||| ||||||
Sbjct: 6299167 tgtgcacctgcggcttgacctcttcccaggcccagttcttgcgcatgaag 6299216




 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 199     cacgccgccgaagcccttgac 219
               |||||||||||||||||||||
Sbjct: 4726279 cacgccgccgaagcccttgac 4726299




 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 241     gtcgagcttcttcggcagca 260
               ||||||||||||||||||||
Sbjct: 2544962 gtcgagcttcttcggcagca 2544943




 Score = 38.2 bits (19), Expect = 0.021
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 211     gcccttgaccatctccagg 229
               |||||||||||||||||||
Sbjct: 6371333 gcccttgaccatctccagg 6371315




 Score = 34.2 bits (17), Expect = 0.33
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 205     gccgaagcccttgaccatctc 225
               |||||||||||||||| ||||
Sbjct: 3443233 gccgaagcccttgaccgtctc 3443253




 Score = 34.2 bits (17), Expect = 0.33
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 327     ggatctgcgccagtacc 343
               |||||||||||||||||
Sbjct: 4961386 ggatctgcgccagtacc 4961402




 Score = 34.2 bits (17), Expect = 0.33
 Identities = 23/25 (92%)
 Strand = Plus / Minus

                                        
Query: 223     ctccagggccacttcctcgtcgagc 247
               |||||||||| | ||||||||||||
Sbjct: 5491198 ctccagggcctcgtcctcgtcgagc 5491174




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 566    tgttgccgaccccggt 581
              ||||||||||||||||
Sbjct: 283264 tgttgccgaccccggt 283249




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 426     gatcaggtagtcgtcg 441
               ||||||||||||||||
Sbjct: 1752285 gatcaggtagtcgtcg 1752270




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 341     acctggttggcgaagg 356
               ||||||||||||||||
Sbjct: 1880027 acctggttggcgaagg 1880012




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 334     cgccagtacctggttg 349
               ||||||||||||||||
Sbjct: 2302093 cgccagtacctggttg 2302108




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 426     gatcaggtagtcgtcg 441
               ||||||||||||||||
Sbjct: 2799838 gatcaggtagtcgtcg 2799853




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 242     tcgagcttcttcggca 257
               ||||||||||||||||
Sbjct: 3292046 tcgagcttcttcggca 3292061




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 159     cgccgatgtactcggc 174
               ||||||||||||||||
Sbjct: 4862174 cgccgatgtactcggc 4862159




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 202     gccgccgaagcccttg 217
               ||||||||||||||||
Sbjct: 5363641 gccgccgaagcccttg 5363626




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 219     ccatctccagggccac 234
               ||||||||||||||||
Sbjct: 5563462 ccatctccagggccac 5563447




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 306     cgtacttctgctcgaa 321
               ||||||||||||||||
Sbjct: 5575458 cgtacttctgctcgaa 5575473




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 223     ctccagggccacttcc 238
               ||||||||||||||||
Sbjct: 5726630 ctccagggccacttcc 5726645




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 564     gatgttgccgaccccg 579
               ||||||||||||||||
Sbjct: 6217146 gatgttgccgaccccg 6217131




 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 560     ggcggatgttgccgac 575
               ||||||||||||||||
Sbjct: 6384985 ggcggatgttgccgac 6385000




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 189    gctgggtgaccacgc 203
              |||||||||||||||
Sbjct: 435517 gctgggtgaccacgc 435503




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 390    cgttgcccaggttga 404
              |||||||||||||||
Sbjct: 828135 cgttgcccaggttga 828149




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 263    tcgacgctcaggcgc 277
              |||||||||||||||
Sbjct: 864405 tcgacgctcaggcgc 864391




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 426    gatcaggtagtcgtc 440
              |||||||||||||||
Sbjct: 877157 gatcaggtagtcgtc 877143




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 331    ctgcgccagtacctg 345
              |||||||||||||||
Sbjct: 933423 ctgcgccagtacctg 933409




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 165     tgtactcggcctgtt 179
               |||||||||||||||
Sbjct: 1065054 tgtactcggcctgtt 1065068




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 214     cttgaccatctccag 228
               |||||||||||||||
Sbjct: 1339262 cttgaccatctccag 1339276




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 542     gacgacgattgacta 556
               |||||||||||||||
Sbjct: 1424856 gacgacgattgacta 1424842




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 162     cgatgtactcggcct 176
               |||||||||||||||
Sbjct: 1429560 cgatgtactcggcct 1429546




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 216     tgaccatctccaggg 230
               |||||||||||||||
Sbjct: 1679624 tgaccatctccaggg 1679610




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 199     cacgccgccgaagcc 213
               |||||||||||||||
Sbjct: 1877136 cacgccgccgaagcc 1877122




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 559     gggcggatgttgccg 573
               |||||||||||||||
Sbjct: 1898025 gggcggatgttgccg 1898011




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 239     tcgtcgagcttcttc 253
               |||||||||||||||
Sbjct: 1916958 tcgtcgagcttcttc 1916972




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 283     cttctcggcggccgg 297
               |||||||||||||||
Sbjct: 2013462 cttctcggcggccgg 2013476




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 286     ctcggcggccggtag 300
               |||||||||||||||
Sbjct: 2491775 ctcggcggccggtag 2491761




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 735     gtcgaacggcagtat 749
               |||||||||||||||
Sbjct: 2665895 gtcgaacggcagtat 2665909




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 560     ggcggatgttgccga 574
               |||||||||||||||
Sbjct: 2988587 ggcggatgttgccga 2988601




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 200     acgccgccgaagccc 214
               |||||||||||||||
Sbjct: 3263495 acgccgccgaagccc 3263509




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 190     ctgggtgaccacgcc 204
               |||||||||||||||
Sbjct: 3338056 ctgggtgaccacgcc 3338070




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 201     cgccgccgaagccct 215
               |||||||||||||||
Sbjct: 3434568 cgccgccgaagccct 3434554




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 253     cggcagcacttcgac 267
               |||||||||||||||
Sbjct: 3546543 cggcagcacttcgac 3546557




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 197     accacgccgccgaag 211
               |||||||||||||||
Sbjct: 3565578 accacgccgccgaag 3565592




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 200     acgccgccgaagccc 214
               |||||||||||||||
Sbjct: 3610249 acgccgccgaagccc 3610263




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 331     ctgcgccagtacctg 345
               |||||||||||||||
Sbjct: 3954358 ctgcgccagtacctg 3954372




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 313     ctgctcgaacaggtg 327
               |||||||||||||||
Sbjct: 4121100 ctgctcgaacaggtg 4121086




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 234     cttcctcgtcgagct 248
               |||||||||||||||
Sbjct: 4228431 cttcctcgtcgagct 4228417




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 314     tgctcgaacaggtgg 328
               |||||||||||||||
Sbjct: 4769872 tgctcgaacaggtgg 4769886




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 196     gaccacgccgccgaa 210
               |||||||||||||||
Sbjct: 4834158 gaccacgccgccgaa 4834144




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 428     tcaggtagtcgtcgg 442
               |||||||||||||||
Sbjct: 4899972 tcaggtagtcgtcgg 4899958




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 1006    ggtgccgcgcgagcc 1020
               |||||||||||||||
Sbjct: 4908559 ggtgccgcgcgagcc 4908573




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 200     acgccgccgaagccc 214
               |||||||||||||||
Sbjct: 4935331 acgccgccgaagccc 4935317




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 180     tcggggtcagctggg 194
               |||||||||||||||
Sbjct: 5187273 tcggggtcagctggg 5187287




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 299     aggtcggcgtacttc 313
               |||||||||||||||
Sbjct: 5226364 aggtcggcgtacttc 5226350




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 271     caggcgcttggtcttctcg 289
               ||||||||||| |||||||
Sbjct: 5435266 caggcgcttggccttctcg 5435284




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 291     cggccggtaggtcgg 305
               |||||||||||||||
Sbjct: 5671001 cggccggtaggtcgg 5670987




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 230     gccacttcctcgtcg 244
               |||||||||||||||
Sbjct: 5762671 gccacttcctcgtcg 5762685




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 360     cgtccatgatccggc 374
               |||||||||||||||
Sbjct: 5786335 cgtccatgatccggc 5786349




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 196     gaccacgccgccgaa 210
               |||||||||||||||
Sbjct: 6161844 gaccacgccgccgaa 6161830




 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 238     ctcgtcgagcttctt 252
               |||||||||||||||
Sbjct: 6480723 ctcgtcgagcttctt 6480709




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5650
Number of Sequences: 1
Number of extensions: 5650
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of query: 1023
length of database: 6,534,396
effective HSP length: 17
effective length of query: 1006
effective length of database: 6,534,379
effective search space: 6573585274
effective search space used: 6573585274
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)