BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (968 letters)

Distribution of 16 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           115   1e-25 
>GCTS_68 
          Length = 6534396

 Score =  115 bits (58), Expect = 1e-25
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                         
Query: 63      tacggcaagctggtccgccagttccccaccgcaggctcggcctatacctacgcgcaac 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1552133 tacggcaagctggtccgccagttccccaccgcaggctcggcctatacctacgcgcaac 1552190

 Score = 38.2 bits (19), Expect = 0.020
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 96      ggctcggcctatacctacg 114
               |||||||||||||||||||
Sbjct: 3429370 ggctcggcctatacctacg 3429352

 Score = 36.2 bits (18), Expect = 0.080
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                         
Query: 256     tgggtggtgatgtacgtggtgatcat 281
               ||||||||||||| |||| |||||||
Sbjct: 1552325 tgggtggtgatgttcgtgctgatcat 1552350

 Score = 34.2 bits (17), Expect = 0.32
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 596     gtggaagagaatggtga 612
               |||||||||||||||||
Sbjct: 5758102 gtggaagagaatggtga 5758086

 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                             
Query: 455   ggaaaaggaagggggg 470
             ||||||||||||||||
Sbjct: 57070 ggaaaaggaagggggg 57085

 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 128     gcaggcctggccaggc 143
               ||||||||||||||||
Sbjct: 2122097 gcaggcctggccaggc 2122112

 Score = 32.2 bits (16), Expect = 1.3
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 68      caagctggtccgccagttcc 87
               ||||||||||||| ||||||
Sbjct: 2357093 caagctggtccgcgagttcc 2357112

 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 263     tgatgtacgtggtgat 278
               ||||||||||||||||
Sbjct: 3834517 tgatgtacgtggtgat 3834502

 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 65      cggcaagctggtccgc 80
               ||||||||||||||||
Sbjct: 5394715 cggcaagctggtccgc 5394700

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 454     gggaaaaggaagggg 468
               |||||||||||||||
Sbjct: 1653599 gggaaaaggaagggg 1653585

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 266     tgtacgtggtgatca 280
               |||||||||||||||
Sbjct: 1920830 tgtacgtggtgatca 1920816

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 65      cggcaagctggtccgccag 83
               ||||||||||||| |||||
Sbjct: 2096576 cggcaagctggtcagccag 2096558

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 292     agggtgatcagggtg 306
               |||||||||||||||
Sbjct: 4840118 agggtgatcagggtg 4840104

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 65      cggcaagctggtccgccag 83
               |||||||||||| ||||||
Sbjct: 5132896 cggcaagctggtgcgccag 5132878

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 292     agggtgatcagggtg 306
               |||||||||||||||
Sbjct: 5190573 agggtgatcagggtg 5190559

 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 65      cggcaagctggtccgccag 83
               ||||||||||||| |||||
Sbjct: 5848662 cggcaagctggtcagccag 5848680
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2032
Number of Sequences: 1
Number of extensions: 2032
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of query: 968
length of database: 6,534,396
effective HSP length: 16
effective length of query: 952
effective length of database: 6,534,380
effective search space: 6220729760
effective search space used: 6220729760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)