BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (1145 letters)

Distribution of 34 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           238   1e-62 



>GCTS_68 
          Length = 6534396

 Score =  238 bits (120), Expect = 1e-62
 Identities = 129/132 (97%)
 Strand = Plus / Minus

                                                                           
Query: 110     tataacaacgtctgggtcgcccccggcgagccgcgcaacctgaccatgagcctgaccctg 169
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4962105 tataacaacgtctgggtcgcccccggcgagccgcgcaacctgaccatgagcctgaccctg 4962046

                                                                           
Query: 170     aactactgagccctctaccgccgccaggaagccatgccatgcaaggacacacactgctgc 229
               |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 4962045 aactactgagccctctaccgccgccaggaagccatgccatgcaaggacgcacaccgctgc 4961986

                           
Query: 230     gggaaaccctcc 241
                |||||||||||
Sbjct: 4961985 tggaaaccctcc 4961974






 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 133     cggcgagccgcgcaacctga 152
               ||||||||||||||||||||
Sbjct: 4097457 cggcgagccgcgcaacctga 4097476






 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 222     actgctgcgggaaaccc 238
               |||||||||||||||||
Sbjct: 5975704 actgctgcgggaaaccc 5975720






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 254     gcgagattcgcccgct 269
               ||||||||||||||||
Sbjct: 1133429 gcgagattcgcccgct 1133444






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 187     ccgccgccaggaagcc 202
               ||||||||||||||||
Sbjct: 2647306 ccgccgccaggaagcc 2647321






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 191     cgccaggaagccatgccatg 210
               ||||||||||||| ||||||
Sbjct: 2830442 cgccaggaagccacgccatg 2830461






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 128     gcccccggcgagccgc 143
               ||||||||||||||||
Sbjct: 2907258 gcccccggcgagccgc 2907243






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 691     atagattggagcaaaaatat 710
               ||||||||||| ||||||||
Sbjct: 3187583 atagattggagaaaaaatat 3187564






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 190     ccgccaggaagccatgccat 209
               |||||||||||||| |||||
Sbjct: 3649810 ccgccaggaagccaggccat 3649829






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 118     cgtctgggtcgcccccggcg 137
               |||||||||||||| |||||
Sbjct: 4994675 cgtctgggtcgccctcggcg 4994694






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 848     ttttcccgctggcgctcgca 867
               ||||||||||| ||||||||
Sbjct: 5339416 ttttcccgctgccgctcgca 5339435






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 307    cggcacttctacaac 321
              |||||||||||||||
Sbjct: 849350 cggcacttctacaac 849336






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 191     cgccaggaagccatg 205
               |||||||||||||||
Sbjct: 1272083 cgccaggaagccatg 1272097






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 133     cggcgagccgcgcaacctg 151
               |||| ||||||||||||||
Sbjct: 1536076 cggccagccgcgcaacctg 1536058






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 155     atgagcctgaccctg 169
               |||||||||||||||
Sbjct: 2004215 atgagcctgaccctg 2004201






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 159     gcctgaccctgaact 173
               |||||||||||||||
Sbjct: 2038633 gcctgaccctgaact 2038619






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 149     ctgaccatgagcctg 163
               |||||||||||||||
Sbjct: 2543506 ctgaccatgagcctg 2543520






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 124     ggtcgcccccggcga 138
               |||||||||||||||
Sbjct: 2602620 ggtcgcccccggcga 2602606






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 852     cccgctggcgctcgc 866
               |||||||||||||||
Sbjct: 2729931 cccgctggcgctcgc 2729945






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 194     caggaagccatgcca 208
               |||||||||||||||
Sbjct: 2866788 caggaagccatgcca 2866802






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 124     ggtcgcccccggcga 138
               |||||||||||||||
Sbjct: 3211844 ggtcgcccccggcga 3211858






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 172     ctactgagccctctaccgc 190
               |||||| ||||||||||||
Sbjct: 3369796 ctactgcgccctctaccgc 3369814






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 184     ctaccgccgccagga 198
               |||||||||||||||
Sbjct: 3795789 ctaccgccgccagga 3795803






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 155     atgagcctgaccctg 169
               |||||||||||||||
Sbjct: 3834815 atgagcctgaccctg 3834801






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 296     cggctgcaattcggc 310
               |||||||||||||||
Sbjct: 4128375 cggctgcaattcggc 4128389






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 296     cggctgcaattcggc 310
               |||||||||||||||
Sbjct: 4718063 cggctgcaattcggc 4718077






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 476     tattggtgttgttgg 490
               |||||||||||||||
Sbjct: 5028428 tattggtgttgttgg 5028414






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 133     cggcgagccgcgcaa 147
               |||||||||||||||
Sbjct: 5039480 cggcgagccgcgcaa 5039494






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 126     tcgcccccggcgagc 140
               |||||||||||||||
Sbjct: 5449220 tcgcccccggcgagc 5449206






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 131     cccggcgagccgcgc 145
               |||||||||||||||
Sbjct: 5695587 cccggcgagccgcgc 5695601






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 179     gccctctaccgccgc 193
               |||||||||||||||
Sbjct: 5702530 gccctctaccgccgc 5702544






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 141     cgcgcaacctgacca 155
               |||||||||||||||
Sbjct: 5754600 cgcgcaacctgacca 5754614






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 852     cccgctggcgctcgc 866
               |||||||||||||||
Sbjct: 5954176 cccgctggcgctcgc 5954162






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 159     gcctgaccctgaact 173
               |||||||||||||||
Sbjct: 6019147 gcctgaccctgaact 6019161






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3084
Number of Sequences: 1
Number of extensions: 3084
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of query: 1145
length of database: 6,534,396
effective HSP length: 17
effective length of query: 1128
effective length of database: 6,534,379
effective search space: 7370779512
effective search space used: 7370779512
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)