BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (646 letters)

Distribution of 43 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                          1084   0.0   



>GCTS_68 
          Length = 6534396

 Score = 1084 bits (547), Expect = 0.0
 Identities = 550/551 (99%)
 Strand = Plus / Plus

                                                                           
Query: 58      tacctacctcgggcttgtcccacatgtgtgccacctgtttctccaggcgttgcgacaaca 117
               |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5153138 tacctacctcgggcttgtcccacatgtgtgccacctgtttctccaggcgttgcggcaaca 5153197

                                                                           
Query: 118     tgatgtcgtccgacccgaagggcacgatgagatttccccgggccctggcgatcgcctcgt 177
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5153198 tgatgtcgtccgacccgaagggcacgatgagatttccccgggccctggcgatcgcctcgt 5153257

                                                                           
Query: 178     tgagcgttttcgacagtccctggttctgctggaccctgaggtcgaagccgtacttcgcct 237
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5153258 tgagcgttttcgacagtccctggttctgctggaccctgaggtcgaagccgtacttcgcct 5153317

                                                                           
Query: 238     ggagcccgtgcaaaagctcgacgctgccatcgctggaaccatcgtccaccaccagcagtt 297
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5153318 ggagcccgtgcaaaagctcgacgctgccatcgctggaaccatcgtccaccaccagcagtt 5153377

                                                                           
Query: 298     ccacgttgcggtacgtctgcgcagccacgctggcgatgctcgcttctatgtacttttcat 357
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5153378 ccacgttgcggtacgtctgcgcagccacgctggcgatgctcgcttctatgtacttttcat 5153437

                                                                           
Query: 358     ggttataggaagcgatgatcacggaaaccaatggctgcgaaccatcatcgacgagcgtca 417
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5153438 ggttataggaagcgatgatcacggaaaccaatggctgcgaaccatcatcgacgagcgtca 5153497

                                                                           
Query: 418     taactacaaccttacctgtccttcacgtccccattcaaagcgccagacatgcatgagcga 477
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5153498 taactacaaccttacctgtccttcacgtccccattcaaagcgccagacatgcatgagcga 5153557

                                                                           
Query: 478     tcctgcgatcttcatcggtcctacacctccccccagcccggaaaaacaagctgaacaata 537
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5153558 tcctgcgatcttcatcggtcctacacctccccccagcccggaaaaacaagctgaacaata 5153617

                                                                           
Query: 538     gcaaacacgcctgaagccccagctcttttcggctgctactctcaggtaaagatacgtcgc 597
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5153618 gcaaacacgcctgaagccccagctcttttcggctgctactctcaggtaaagatacgtcgc 5153677

                          
Query: 598     caggtcttctc 608
               |||||||||||
Sbjct: 5153678 caggtcttctc 5153688






 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 280     cgtccaccaccagcagttc 298
               |||||||||||||||||||
Sbjct: 5754983 cgtccaccaccagcagttc 5754965






 Score = 34.2 bits (17), Expect = 0.21
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 285     accaccagcagttccac 301
               |||||||||||||||||
Sbjct: 2364351 accaccagcagttccac 2364335






 Score = 34.2 bits (17), Expect = 0.21
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 278     atcgtccaccaccagca 294
               |||||||||||||||||
Sbjct: 3167969 atcgtccaccaccagca 3167985






 Score = 34.2 bits (17), Expect = 0.21
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 279     tcgtccaccaccagcag 295
               |||||||||||||||||
Sbjct: 4988488 tcgtccaccaccagcag 4988472






 Score = 34.2 bits (17), Expect = 0.21
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 206     ctggaccctgaggtcga 222
               |||||||||||||||||
Sbjct: 5425782 ctggaccctgaggtcga 5425766






 Score = 32.2 bits (16), Expect = 0.83
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 162    ctggcgatcgcctcgt 177
              ||||||||||||||||
Sbjct: 401435 ctggcgatcgcctcgt 401420






 Score = 32.2 bits (16), Expect = 0.83
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 365     ggaagcgatgatcacg 380
               ||||||||||||||||
Sbjct: 1039268 ggaagcgatgatcacg 1039253






 Score = 32.2 bits (16), Expect = 0.83
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 321     gccacgctggcgatgc 336
               ||||||||||||||||
Sbjct: 2269014 gccacgctggcgatgc 2269029






 Score = 32.2 bits (16), Expect = 0.83
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 280     cgtccaccaccagcagttcc 299
               |||||||| |||||||||||
Sbjct: 3484334 cgtccaccgccagcagttcc 3484353






 Score = 32.2 bits (16), Expect = 0.83
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 279     tcgtccaccaccagca 294
               ||||||||||||||||
Sbjct: 3852890 tcgtccaccaccagca 3852905






 Score = 32.2 bits (16), Expect = 0.83
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 279     tcgtccaccaccagca 294
               ||||||||||||||||
Sbjct: 4227595 tcgtccaccaccagca 4227610






 Score = 32.2 bits (16), Expect = 0.83
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 307     ggtacgtctgcgcagc 322
               ||||||||||||||||
Sbjct: 4543781 ggtacgtctgcgcagc 4543796






 Score = 32.2 bits (16), Expect = 0.83
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 279     tcgtccaccaccagca 294
               ||||||||||||||||
Sbjct: 4905920 tcgtccaccaccagca 4905935






 Score = 32.2 bits (16), Expect = 0.83
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 280     cgtccaccaccagcag 295
               ||||||||||||||||
Sbjct: 5797778 cgtccaccaccagcag 5797793






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                           
Query: 156  cgggccctggcgatc 170
            |||||||||||||||
Sbjct: 5206 cgggccctggcgatc 5192






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                            
Query: 195   ccctggttctgctgg 209
             |||||||||||||||
Sbjct: 52474 ccctggttctgctgg 52488






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 278    atcgtccaccaccag 292
              |||||||||||||||
Sbjct: 899062 atcgtccaccaccag 899048






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 323    cacgctggcgatgct 337
              |||||||||||||||
Sbjct: 906787 cacgctggcgatgct 906801






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 281     gtccaccaccagcag 295
               |||||||||||||||
Sbjct: 1449048 gtccaccaccagcag 1449034






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 281     gtccaccaccagcag 295
               |||||||||||||||
Sbjct: 1499194 gtccaccaccagcag 1499180






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 195     ccctggttctgctgg 209
               |||||||||||||||
Sbjct: 1741614 ccctggttctgctgg 1741600






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 279     tcgtccaccaccagcagtt 297
               ||||||| |||||||||||
Sbjct: 2001738 tcgtccagcaccagcagtt 2001720






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 214     tgaggtcgaagccgt 228
               |||||||||||||||
Sbjct: 2171019 tgaggtcgaagccgt 2171005






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 284     caccaccagcagttc 298
               |||||||||||||||
Sbjct: 2393292 caccaccagcagttc 2393306






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 231     ttcgcctggagcccg 245
               |||||||||||||||
Sbjct: 2601583 ttcgcctggagcccg 2601569






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 159     gccctggcgatcgcctcgt 177
               |||||||||||| ||||||
Sbjct: 2762269 gccctggcgatctcctcgt 2762251






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 208     ggaccctgaggtcga 222
               |||||||||||||||
Sbjct: 2897992 ggaccctgaggtcga 2898006






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 156     cgggccctggcgatc 170
               |||||||||||||||
Sbjct: 2941894 cgggccctggcgatc 2941880






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 505     tccccccagcccgga 519
               |||||||||||||||
Sbjct: 3071739 tccccccagcccgga 3071753






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 328     tggcgatgctcgctt 342
               |||||||||||||||
Sbjct: 3396530 tggcgatgctcgctt 3396516






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 256     cgacgctgccatcgc 270
               |||||||||||||||
Sbjct: 3449815 cgacgctgccatcgc 3449801






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 482     gcgatcttcatcggt 496
               |||||||||||||||
Sbjct: 3673150 gcgatcttcatcggt 3673164






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 251     aagctcgacgctgcc 265
               |||||||||||||||
Sbjct: 3698277 aagctcgacgctgcc 3698263






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 279     tcgtccaccaccagc 293
               |||||||||||||||
Sbjct: 4135743 tcgtccaccaccagc 4135729






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 159     gccctggcgatcgcc 173
               |||||||||||||||
Sbjct: 4417082 gccctggcgatcgcc 4417096






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 286     ccaccagcagttcca 300
               |||||||||||||||
Sbjct: 4953773 ccaccagcagttcca 4953787






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 159     gccctggcgatcgcc 173
               |||||||||||||||
Sbjct: 4977556 gccctggcgatcgcc 4977570






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 154     cccgggccctggcga 168
               |||||||||||||||
Sbjct: 5130144 cccgggccctggcga 5130130






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 154     cccgggccctggcga 168
               |||||||||||||||
Sbjct: 5186826 cccgggccctggcga 5186840






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 195     ccctggttctgctgg 209
               |||||||||||||||
Sbjct: 5757291 ccctggttctgctgg 5757305






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 160     ccctggcgatcgcct 174
               |||||||||||||||
Sbjct: 6050262 ccctggcgatcgcct 6050276






 Score = 30.2 bits (15), Expect = 3.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 132     ccgaagggcacgatgagat 150
               ||||||||||||| |||||
Sbjct: 6283704 ccgaagggcacgacgagat 6283686






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4084
Number of Sequences: 1
Number of extensions: 4084
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of query: 646
length of database: 6,534,396
effective HSP length: 16
effective length of query: 630
effective length of database: 6,534,380
effective search space: 4116659400
effective search space used: 4116659400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)