BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (884 letters)

Distribution of 42 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           547   e-156 

>GCTS_68 
          Length = 6534396

 Score =  547 bits (276), Expect = e-156
 Identities = 276/276 (100%)
 Strand = Plus / Minus

                                                                          
Query: 61     taggcgccgctgcgcgcagccgccaacccctcttccccgtctcggcaccaggtcacctcg 120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318445 taggcgccgctgcgcgcagccgccaacccctcttccccgtctcggcaccaggtcacctcg 318386

                                                                          
Query: 121    aaaccgctgccattgaggtgctggaacagatgtgcgcccagtgtcggatcgtcctcgatg 180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318385 aaaccgctgccattgaggtgctggaacagatgtgcgcccagtgtcggatcgtcctcgatg 318326

                                                                          
Query: 181    gccagcagtcgggggtcgggcgtcagggatgggaacatggcagccaaataagattgatta 240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318325 gccagcagtcgggggtcgggcgtcagggatgggaacatggcagccaaataagattgatta 318266

                                                                          
Query: 241    gcaatcgtgccagtattcacgatctttccgcttcgtcgcaagccgaatccgccgggctgc 300
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318265 gcaatcgtgccagtattcacgatctttccgcttcgtcgcaagccgaatccgccgggctgc 318206

                                                  
Query: 301    gcacatcggtgcagattccccttccgcgacccgcta 336
              ||||||||||||||||||||||||||||||||||||
Sbjct: 318205 gcacatcggtgcagattccccttccgcgacccgcta 318170




 Score = 36.2 bits (18), Expect = 0.073
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 667     ccttcgcccgtcctttcc 684
               ||||||||||||||||||
Sbjct: 3436784 ccttcgcccgtcctttcc 3436767




 Score = 34.2 bits (17), Expect = 0.29
 Identities = 23/25 (92%)
 Strand = Plus / Minus

                                        
Query: 134     tgaggtgctggaacagatgtgcgcc 158
               |||||||||||||||| || |||||
Sbjct: 3133945 tgaggtgctggaacagctgggcgcc 3133921




 Score = 34.2 bits (17), Expect = 0.29
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 165     cggatcgtcctcgatggccag 185
               |||||| ||||||||||||||
Sbjct: 6156809 cggatcttcctcgatggccag 6156829




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 437    tggtggttgttgtgtt 452
              ||||||||||||||||
Sbjct: 776573 tggtggttgttgtgtt 776558




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 108     ccaggtcacctcgaaa 123
               ||||||||||||||||
Sbjct: 1765927 ccaggtcacctcgaaa 1765912




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 69      gctgcgcgcagccgcc 84
               ||||||||||||||||
Sbjct: 2516657 gctgcgcgcagccgcc 2516642




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 69      gctgcgcgcagccgcc 84
               ||||||||||||||||
Sbjct: 2516646 gctgcgcgcagccgcc 2516661




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 356     tcgaccgcgtggccaa 371
               ||||||||||||||||
Sbjct: 2580507 tcgaccgcgtggccaa 2580522




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 625     ttcggccctgtgcgcgttgt 644
               ||||||| ||||||||||||
Sbjct: 3845743 ttcggccttgtgcgcgttgt 3845762




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 170     cgtcctcgatggccag 185
               ||||||||||||||||
Sbjct: 4119832 cgtcctcgatggccag 4119817




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 173     cctcgatggccagcag 188
               ||||||||||||||||
Sbjct: 4296054 cctcgatggccagcag 4296069




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 320     ccttccgcgacccgct 335
               ||||||||||||||||
Sbjct: 4678938 ccttccgcgacccgct 4678953




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 136     aggtgctggaacagat 151
               ||||||||||||||||
Sbjct: 5108743 aggtgctggaacagat 5108728




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 602     ctcttccctttcctgc 617
               ||||||||||||||||
Sbjct: 5620139 ctcttccctttcctgc 5620154




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 63      ggcgccgctgcgcgca 78
               ||||||||||||||||
Sbjct: 5695484 ggcgccgctgcgcgca 5695499




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 179    tggccagcagtcggg 193
              |||||||||||||||
Sbjct: 376565 tggccagcagtcggg 376579




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 609    ctttcctgctttttc 623
              |||||||||||||||
Sbjct: 553692 ctttcctgctttttc 553706




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 69     gctgcgcgcagccgc 83
              |||||||||||||||
Sbjct: 638093 gctgcgcgcagccgc 638107




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 75     cgcagccgccaaccc 89
              |||||||||||||||
Sbjct: 725276 cgcagccgccaaccc 725262




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 290     cgccgggctgcgcac 304
               |||||||||||||||
Sbjct: 1007256 cgccgggctgcgcac 1007270




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 135     gaggtgctggaacag 149
               |||||||||||||||
Sbjct: 1193974 gaggtgctggaacag 1193988




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 175     tcgatggccagcagt 189
               |||||||||||||||
Sbjct: 1520665 tcgatggccagcagt 1520679




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 64      gcgccgctgcgcgcagccg 82
               |||||||||||||| ||||
Sbjct: 1570910 gcgccgctgcgcgcggccg 1570928




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 135     gaggtgctggaacag 149
               |||||||||||||||
Sbjct: 1611683 gaggtgctggaacag 1611697




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 288     tccgccgggctgcgc 302
               |||||||||||||||
Sbjct: 2009405 tccgccgggctgcgc 2009419




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 71      tgcgcgcagccgcca 85
               |||||||||||||||
Sbjct: 2053583 tgcgcgcagccgcca 2053597




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 355     atcgaccgcgtggcc 369
               |||||||||||||||
Sbjct: 2135538 atcgaccgcgtggcc 2135552




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 176     cgatggccagcagtc 190
               |||||||||||||||
Sbjct: 2144320 cgatggccagcagtc 2144306




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 290     cgccgggctgcgcac 304
               |||||||||||||||
Sbjct: 3070820 cgccgggctgcgcac 3070806




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 63      ggcgccgctgcgcgc 77
               |||||||||||||||
Sbjct: 3389036 ggcgccgctgcgcgc 3389022




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 62      aggcgccgctgcgcg 76
               |||||||||||||||
Sbjct: 3549478 aggcgccgctgcgcg 3549464




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 65      cgccgctgcgcgcag 79
               |||||||||||||||
Sbjct: 3836451 cgccgctgcgcgcag 3836437




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 63      ggcgccgctgcgcgc 77
               |||||||||||||||
Sbjct: 3867182 ggcgccgctgcgcgc 3867196




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 661     cgttcgccttcgccc 675
               |||||||||||||||
Sbjct: 4154990 cgttcgccttcgccc 4154976




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 356     tcgaccgcgtggcca 370
               |||||||||||||||
Sbjct: 5363376 tcgaccgcgtggcca 5363390




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 529     gcgcgcggccgctgt 543
               |||||||||||||||
Sbjct: 5416403 gcgcgcggccgctgt 5416389




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 117     ctcgaaaccgctgcc 131
               |||||||||||||||
Sbjct: 5545848 ctcgaaaccgctgcc 5545834




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 436     gtggtggttgttgtg 450
               |||||||||||||||
Sbjct: 6136890 gtggtggttgttgtg 6136876




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 215     acatggcagccaaat 229
               |||||||||||||||
Sbjct: 6186551 acatggcagccaaat 6186537




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 651     cgtcccccctcgttc 665
               |||||||||||||||
Sbjct: 6256068 cgtcccccctcgttc 6256054




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 67      ccgctgcgcgcagcc 81
               |||||||||||||||
Sbjct: 6351818 ccgctgcgcgcagcc 6351832




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4398
Number of Sequences: 1
Number of extensions: 4398
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of query: 884
length of database: 6,534,396
effective HSP length: 16
effective length of query: 868
effective length of database: 6,534,380
effective search space: 5671841840
effective search space used: 5671841840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)