BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (951 letters)

Distribution of 45 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           321   9e-88 

>GCTS_68 
          Length = 6534396

 Score =  321 bits (162), Expect = 9e-88
 Identities = 174/178 (97%)
 Strand = Plus / Plus

                                                                           
Query: 64      tagtcggtattcaggcgcgggccgctggagcagccggccagcagcgacagggtgaaagcc 123
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5713816 tagtcggtattcaggcgcgggccgctggagcagccggccagcagcgacagggtgaaagcc 5713875

                                                                           
Query: 124     agtagaacgaacgaacgcatgatgactccgaaaaaaatgggcagcgcggtcaggcggcga 183
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5713876 agtagaacgaacgaacgcatgatgactccgaaaaaaatgggcagcgcggtcaggcggcga 5713935

                                                                         
Query: 184     tgtgcaacacgctgcgcaggttgtccaacagcataccgacgctgatcatcatctgcag 241
               ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||
Sbjct: 5713936 tgtgcaacacgctgcgcaggttgtccaacagcatatcgacgctgagcatgatcagcag 5713993




 Score = 38.2 bits (19), Expect = 0.020
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 101     ccagcagcgacagggtgaa 119
               |||||||||||||||||||
Sbjct: 2806346 ccagcagcgacagggtgaa 2806364




 Score = 38.2 bits (19), Expect = 0.020
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 91      gagcagccggccagcagcgacag 113
               |||||| ||||||||||||||||
Sbjct: 4282246 gagcaggcggccagcagcgacag 4282224




 Score = 36.2 bits (18), Expect = 0.079
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                         
Query: 89      tggagcagccggccagcagcgacagg 114
               |||| |||||||||||||||| ||||
Sbjct: 1135521 tggaacagccggccagcagcgccagg 1135496




 Score = 36.2 bits (18), Expect = 0.079
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 90      ggagcagccggccagcag 107
               ||||||||||||||||||
Sbjct: 6424259 ggagcagccggccagcag 6424242




 Score = 34.2 bits (17), Expect = 0.31
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 328     ccccggctgcccgcccc 344
               |||||||||||||||||
Sbjct: 2355702 ccccggctgcccgcccc 2355718




 Score = 34.2 bits (17), Expect = 0.31
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 93      gcagccggccagcagcg 109
               |||||||||||||||||
Sbjct: 3639790 gcagccggccagcagcg 3639806




 Score = 34.2 bits (17), Expect = 0.31
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 84      gccgctggagcagccgg 100
               |||||||||||||||||
Sbjct: 3777824 gccgctggagcagccgg 3777808




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 89      tggagcagccggccag 104
               ||||||||||||||||
Sbjct: 2075798 tggagcagccggccag 2075783




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 84      gccgctggagcagccg 99
               ||||||||||||||||
Sbjct: 2360443 gccgctggagcagccg 2360428




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 93      gcagccggccagcagc 108
               ||||||||||||||||
Sbjct: 3216678 gcagccggccagcagc 3216663




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 101     ccagcagcgacagggt 116
               ||||||||||||||||
Sbjct: 3664052 ccagcagcgacagggt 3664037




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 164     gcagcgcggtcaggcg 179
               ||||||||||||||||
Sbjct: 5405846 gcagcgcggtcaggcg 5405861




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 78      gcgcgggccgctggag 93
               ||||||||||||||||
Sbjct: 5646795 gcgcgggccgctggag 5646780




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 99      ggccagcagcgacagg 114
               ||||||||||||||||
Sbjct: 5951498 ggccagcagcgacagg 5951513




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 102     cagcagcgacagggtg 117
               ||||||||||||||||
Sbjct: 6183799 cagcagcgacagggtg 6183784




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 84      gccgctggagcagccg 99
               ||||||||||||||||
Sbjct: 6269699 gccgctggagcagccg 6269684




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 93      gcagccggccagcagc 108
               ||||||||||||||||
Sbjct: 6526047 gcagccggccagcagc 6526062




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 96     gccggccagcagcgacagg 114
              |||||||||||||| ||||
Sbjct: 231605 gccggccagcagcggcagg 231587




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 91     gagcagccggccagc 105
              |||||||||||||||
Sbjct: 707461 gagcagccggccagc 707475




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 103    agcagcgacagggtg 117
              |||||||||||||||
Sbjct: 805670 agcagcgacagggtg 805684




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 827    ttccccttcttcttt 841
              |||||||||||||||
Sbjct: 809092 ttccccttcttcttt 809106




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 105     cagcgacagggtgaa 119
               |||||||||||||||
Sbjct: 1126298 cagcgacagggtgaa 1126284




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 96      gccggccagcagcgacagg 114
               |||||||||||||| ||||
Sbjct: 1841971 gccggccagcagcgccagg 1841989




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 91      gagcagccggccagc 105
               |||||||||||||||
Sbjct: 1923926 gagcagccggccagc 1923940




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 219     ccgacgctgatcatc 233
               |||||||||||||||
Sbjct: 2592131 ccgacgctgatcatc 2592145




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 86      cgctggagcagccgg 100
               |||||||||||||||
Sbjct: 2691943 cgctggagcagccgg 2691929




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 473     ctttcttcttcctcc 487
               |||||||||||||||
Sbjct: 2915143 ctttcttcttcctcc 2915157




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 500     cccttctctcttcccgtcc 518
               |||||| ||||||||||||
Sbjct: 2944308 cccttccctcttcccgtcc 2944326




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 189     aacacgctgcgcaggttgt 207
               ||||||| |||||||||||
Sbjct: 3078604 aacacgccgcgcaggttgt 3078622




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 86      cgctggagcagccggccag 104
               |||||| ||||||||||||
Sbjct: 3276004 cgctggcgcagccggccag 3275986




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 77      ggcgcgggccgctgg 91
               |||||||||||||||
Sbjct: 3343993 ggcgcgggccgctgg 3343979




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 88      ctggagcagccggcc 102
               |||||||||||||||
Sbjct: 3785820 ctggagcagccggcc 3785806




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 320     gcggcctgccccggc 334
               |||||||||||||||
Sbjct: 3938390 gcggcctgccccggc 3938404




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 319     tgcggcctgccccgg 333
               |||||||||||||||
Sbjct: 4023190 tgcggcctgccccgg 4023176




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 87      gctggagcagccggc 101
               |||||||||||||||
Sbjct: 4444381 gctggagcagccggc 4444367




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 191     cacgctgcgcaggtt 205
               |||||||||||||||
Sbjct: 4738350 cacgctgcgcaggtt 4738364




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 86      cgctggagcagccggccagcagc 108
               |||||| |||| |||||||||||
Sbjct: 4833028 cgctggcgcaggcggccagcagc 4833050




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 87      gctggagcagccggc 101
               |||||||||||||||
Sbjct: 5315478 gctggagcagccggc 5315492




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 324     cctgccccggctgcccgcc 342
               |||||||||||||| ||||
Sbjct: 5416008 cctgccccggctgcacgcc 5415990




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 93      gcagccggccagcag 107
               |||||||||||||||
Sbjct: 5545491 gcagccggccagcag 5545477




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 75      caggcgcgggccgct 89
               |||||||||||||||
Sbjct: 5618121 caggcgcgggccgct 5618107




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 84      gccgctggagcagcc 98
               |||||||||||||||
Sbjct: 5918603 gccgctggagcagcc 5918617




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 196     tgcgcaggttgtcca 210
               |||||||||||||||
Sbjct: 6195795 tgcgcaggttgtcca 6195781




 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 100     gccagcagcgacagg 114
               |||||||||||||||
Sbjct: 6303900 gccagcagcgacagg 6303886




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3948
Number of Sequences: 1
Number of extensions: 3948
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of query: 951
length of database: 6,534,396
effective HSP length: 16
effective length of query: 935
effective length of database: 6,534,380
effective search space: 6109645300
effective search space used: 6109645300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)