BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (914 letters)

Distribution of 68 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           303   2e-82 

>GCTS_68 
          Length = 6534396

 Score =  303 bits (153), Expect = 2e-82
 Identities = 214/233 (91%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                          
Query: 242    tcgtgcggtttggaggaatagaccagcgccggcatcaccgtgatgccgtcgacgccgacc 301
              |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 682247 tcgtgcggcttggaggaatagaccagcgccggcatcaccatgatgccgtcgacgccgacc 682306

                                                                          
Query: 302    cgctccaccgccttggccaccttcgccgcgccggtgctggtgaactcggcgatcccgcaa 361
              |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 682307 cgctccaccgccttggccaccttcgccgcgccggcgctggtgaactcggcgatcccgcag 682366

                                                                          
Query: 362    atcacctgcacgcggccgccgtaggatcccttggggacctcgttgacggctttcttctcc 421
              |||||| |||||||||||||| |||   |||||| ||||||| |||||||  ||||||||
Sbjct: 682367 atcaccggcacgcggccgccggaggcatccttggcgacctcggtgacggccatcttctcc 682426

                                                                   
Query: 422    tcaatggtcag-gaggtgttctcgccgacggtgccatataccaacagcccgga 473
              || |||||||| |||||||||||||||||| ||||  |||||| |||||||||
Sbjct: 682427 tcgatggtcagcgaggtgttctcgccgacgctgccgcataccaccagcccgga 682479




 Score =  260 bits (131), Expect = 3e-69
 Identities = 131/131 (100%)
 Strand = Plus / Plus

                                                                          
Query: 64     tacgtcgatgaagcggcgggtgtcgccggagctgtccttgaagcagacgatgttctcgca 123
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682069 tacgtcgatgaagcggcgggtgtcgccggagctgtccttgaagcagacgatgttctcgca 682128

                                                                          
Query: 124    gtcggccagggaaaccaggatgtccggggtgacatcgttccggtagatcggcgggttgtt 183
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682129 gtcggccagggaaaccaggatgtccggggtgacatcgttccggtagatcggcgggttgtt 682188

                         
Query: 184    gtagaccatca 194
              |||||||||||
Sbjct: 682189 gtagaccatca 682199




 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      tgtcgccggagctgtccttg 103
               ||||||||||||||||||||
Sbjct: 1035703 tgtcgccggagctgtccttg 1035684




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                   
Query: 362    atcacctgcacgcggccgccg 382
              |||||||||||||||| ||||
Sbjct: 778189 atcacctgcacgcggcggccg 778169




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 96      tgtccttgaagcagacg 112
               |||||||||||||||||
Sbjct: 4519425 tgtccttgaagcagacg 4519409




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 334     ggtgctggtgaactcgg 350
               |||||||||||||||||
Sbjct: 4735252 ggtgctggtgaactcgg 4735268




 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 316     ggccaccttcgccgcgc 332
               |||||||||||||||||
Sbjct: 5456975 ggccaccttcgccgcgc 5456991




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 295    gccgacccgctccacc 310
              ||||||||||||||||
Sbjct: 477987 gccgacccgctccacc 477972




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 31/36 (86%)
 Strand = Plus / Plus

                                                  
Query: 494    ttggaaatgacgttgtgggtttcttcccagttcacc 529
              |||||||||||  |||||||||| |||  |||||||
Sbjct: 682499 ttggaaatgaccgtgtgggtttcctccaggttcacc 682534




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 117    tctcgcagtcggccag 132
              ||||||||||||||||
Sbjct: 716837 tctcgcagtcggccag 716852




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 505    gttgtgggtttcttcccagt 524
              |||||||||||| |||||||
Sbjct: 757863 gttgtgggtttcctcccagt 757844




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 305    tccaccgccttggcca 320
              ||||||||||||||||
Sbjct: 768255 tccaccgccttggcca 768270




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                       
Query: 275     atcaccgtgatgccgtcgacgccg 298
               |||||| ||||||||||| |||||
Sbjct: 1229628 atcaccatgatgccgtcgccgccg 1229651




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 307     caccgccttggccacc 322
               ||||||||||||||||
Sbjct: 1575794 caccgccttggccacc 1575779




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 293     acgccgacccgctcca 308
               ||||||||||||||||
Sbjct: 1754034 acgccgacccgctcca 1754019




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 261     agaccagcgccggcat 276
               ||||||||||||||||
Sbjct: 2376853 agaccagcgccggcat 2376868




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 307     caccgccttggccaccttcg 326
               ||||||| ||||||||||||
Sbjct: 2992147 caccgccatggccaccttcg 2992128




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 307     caccgccttggccacc 322
               ||||||||||||||||
Sbjct: 3165589 caccgccttggccacc 3165604




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 286     gccgtcgacgccgacc 301
               ||||||||||||||||
Sbjct: 3359339 gccgtcgacgccgacc 3359324




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 293     acgccgacccgctcca 308
               ||||||||||||||||
Sbjct: 3485486 acgccgacccgctcca 3485501




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 322     cttcgccgcgccggtg 337
               ||||||||||||||||
Sbjct: 3677404 cttcgccgcgccggtg 3677389




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 268     cgccggcatcaccgtgatgc 287
               ||||||||||||| ||||||
Sbjct: 3821048 cgccggcatcaccctgatgc 3821067




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 298     gacccgctccaccgcc 313
               ||||||||||||||||
Sbjct: 3970232 gacccgctccaccgcc 3970217




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 268     cgccggcatcaccgtg 283
               ||||||||||||||||
Sbjct: 4172647 cgccggcatcaccgtg 4172662




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 317     gccaccttcgccgcgc 332
               ||||||||||||||||
Sbjct: 4312351 gccaccttcgccgcgc 4312336




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 531     tacaaatcgtctgttt 546
               ||||||||||||||||
Sbjct: 4620836 tacaaatcgtctgttt 4620821




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 82      ggtgtcgccggagctg 97
               ||||||||||||||||
Sbjct: 5127585 ggtgtcgccggagctg 5127570




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 320     accttcgccgcgccgg 335
               ||||||||||||||||
Sbjct: 5698341 accttcgccgcgccgg 5698326




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 175     cgggttgttgtagaccatca 194
               |||||||||||||| |||||
Sbjct: 6044870 cgggttgttgtagagcatca 6044889




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 344     aactcggcgatcccgc 359
               ||||||||||||||||
Sbjct: 6051513 aactcggcgatcccgc 6051528




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 291    cgacgccgacccgct 305
              |||||||||||||||
Sbjct: 107548 cgacgccgacccgct 107534




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                     
Query: 66     cgtcgatgaagcggcgggtgtcg 88
              ||||||||| | |||||||||||
Sbjct: 314674 cgtcgatgaggtggcgggtgtcg 314696




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 87     cgccggagctgtcct 101
              |||||||||||||||
Sbjct: 468882 cgccggagctgtcct 468868




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 296    ccgacccgctccacc 310
              |||||||||||||||
Sbjct: 495125 ccgacccgctccacc 495111




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 322    cttcgccgcgccggtgctg 340
              ||||||||||| |||||||
Sbjct: 768859 cttcgccgcgcgggtgctg 768877




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 290    tcgacgccgacccgc 304
              |||||||||||||||
Sbjct: 878675 tcgacgccgacccgc 878661




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 147    ccggggtgacatcgt 161
              |||||||||||||||
Sbjct: 891117 ccggggtgacatcgt 891103




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 333    cggtgctggtgaact 347
              |||||||||||||||
Sbjct: 935478 cggtgctggtgaact 935464




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 261     agaccagcgccggca 275
               |||||||||||||||
Sbjct: 1170385 agaccagcgccggca 1170399




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 365     acctgcacgcggccg 379
               |||||||||||||||
Sbjct: 1607229 acctgcacgcggccg 1607215




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 290     tcgacgccgacccgc 304
               |||||||||||||||
Sbjct: 1946683 tcgacgccgacccgc 1946669




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 179     ttgttgtagaccatc 193
               |||||||||||||||
Sbjct: 1967549 ttgttgtagaccatc 1967535




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 285     tgccgtcgacgccga 299
               |||||||||||||||
Sbjct: 2178782 tgccgtcgacgccga 2178796




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 340     ggtgaactcggcgat 354
               |||||||||||||||
Sbjct: 2284411 ggtgaactcggcgat 2284397




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 309     ccgccttggccaccttcgc 327
               |||||| ||||||||||||
Sbjct: 2377719 ccgcctcggccaccttcgc 2377737




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 515     tcttcccagttcacc 529
               |||||||||||||||
Sbjct: 2798259 tcttcccagttcacc 2798273




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 330     cgccggtgctggtga 344
               |||||||||||||||
Sbjct: 2963093 cgccggtgctggtga 2963079




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 320     accttcgccgcgccg 334
               |||||||||||||||
Sbjct: 3142069 accttcgccgcgccg 3142083




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 264     ccagcgccggcatca 278
               |||||||||||||||
Sbjct: 3151688 ccagcgccggcatca 3151674




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 113     atgttctcgcagtcggcca 131
               |||| ||||||||||||||
Sbjct: 3338214 atgtcctcgcagtcggcca 3338196




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 442     tcgccgacggtgcca 456
               |||||||||||||||
Sbjct: 3467979 tcgccgacggtgcca 3467993




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 306     ccaccgccttggcca 320
               |||||||||||||||
Sbjct: 3474515 ccaccgccttggcca 3474529




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 280     cgtgatgccgtcgacgccg 298
               ||||| |||||||||||||
Sbjct: 3540540 cgtgaggccgtcgacgccg 3540558




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 330     cgccggtgctggtga 344
               |||||||||||||||
Sbjct: 3550411 cgccggtgctggtga 3550397




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 270     ccggcatcaccgtga 284
               |||||||||||||||
Sbjct: 3555748 ccggcatcaccgtga 3555762




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 369     gcacgcggccgccgt 383
               |||||||||||||||
Sbjct: 3908193 gcacgcggccgccgt 3908179




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 439     ttctcgccgacggtg 453
               |||||||||||||||
Sbjct: 4243369 ttctcgccgacggtg 4243355




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 328     cgcgccggtgctggtgaac 346
               ||||||||||| |||||||
Sbjct: 4391956 cgcgccggtgcaggtgaac 4391938




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 319     caccttcgccgcgccggtg 337
               |||| ||||||||||||||
Sbjct: 4834611 caccgtcgccgcgccggtg 4834629




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 344     aactcggcgatcccg 358
               |||||||||||||||
Sbjct: 4992719 aactcggcgatcccg 4992733




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 776     aaaatagaaatacttttaa 794
               |||||| ||||||||||||
Sbjct: 5709622 aaaataaaaatacttttaa 5709640




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 263     accagcgccggcatcaccg 281
               ||||||| |||||||||||
Sbjct: 5991681 accagcggcggcatcaccg 5991699




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 319     caccttcgccgcgccggtg 337
               |||| ||||||||||||||
Sbjct: 5992629 caccatcgccgcgccggtg 5992647




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 334     ggtgctggtgaactcggcgatcc 356
               ||||||||||| | |||||||||
Sbjct: 6323722 ggtgctggtgatcccggcgatcc 6323744




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 175     cgggttgttgtagac 189
               |||||||||||||||
Sbjct: 6345919 cgggttgttgtagac 6345933




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 24/27 (88%)
 Strand = Plus / Minus

                                          
Query: 315     tggccaccttcgccgcgccggtgctgg 341
               |||| ||| ||||||||||| ||||||
Sbjct: 6451278 tggcgaccctcgccgcgccgctgctgg 6451252




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 85      gtcgccggagctgtc 99
               |||||||||||||||
Sbjct: 6480375 gtcgccggagctgtc 6480389




 Score = 30.2 bits (15), Expect = 4.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 128     gccagggaaaccagg 142
               |||||||||||||||
Sbjct: 6494429 gccagggaaaccagg 6494415




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5983
Number of Sequences: 1
Number of extensions: 5983
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of query: 914
length of database: 6,534,396
effective HSP length: 16
effective length of query: 898
effective length of database: 6,534,380
effective search space: 5867873240
effective search space used: 5867873240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)