BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (937 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           710   0.0   

>GCTS_68 
          Length = 6534396

 Score =  710 bits (358), Expect = 0.0
 Identities = 385/394 (97%)
 Strand = Plus / Plus

                                                                           
Query: 62      ttatcaatacgctgcaaggtcttgttctgtctgtctggccacccgacggcgagcgtgtcc 121
               ||||||||||||||||||||||||| || ||| ||   |  |||||||||||||||||||
Sbjct: 5619276 ttatcaatacgctgcaaggtcttgtactatctctcgacctgcccgacggcgagcgtgtcc 5619335

                                                                           
Query: 122     tgagcgtttcgataggactcacttccgaagcggcctacgagttcctcaaggcgatctttc 181
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5619336 tgagcgtttcgataggactcacttccgaagcggcctacgagttcctcaaggcgatctttc 5619395

                                                                           
Query: 182     tctgctcgttcggcctgatgatgagcgaagccaggaaactggacgaagaagtaagagcct 241
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5619396 tctgctcgttcggcctgatgatgagcgaagccaggaaactggacgaagaagtaagagcct 5619455

                                                                           
Query: 242     tcatatgacgaccccatgatcatcatccgactagacgtcatcctggcgaagaacaaggtc 301
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5619456 tcatatgacgaccccatgatcatcatccgactagacgtcatcctggcgaagaacaaggtc 5619515

                                                                           
Query: 302     cgctccaaggagctggcggaagccatcggtatcaccgaacagaacctgtccctgctgaag 361
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5619516 cgctccaaggagctggcggaagccatcggtatcaccgaacagaacctgtccctgctgaag 5619575

                                                                           
Query: 362     aacggcaaggtgaagggcatccgcctcgacaccctggagaagatctgcgccttcctggac 421
               ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5619576 aacggcaaggtcaagggcatccgcctcgacaccctggagaagatctgcgccttcctggac 5619635

                                                 
Query: 422     tgccagccgggcgacatcctggaatacgtcgcgg 455
               ||||||||||||||||||||||||||||||||||
Sbjct: 5619636 tgccagccgggcgacatcctggaatacgtcgcgg 5619669




 Score =  111 bits (56), Expect = 2e-24
 Identities = 110/128 (85%)
 Strand = Plus / Plus

                                                                           
Query: 305     tccaaggagctggcggaagccatcggtatcaccgaacagaacctgtccctgctgaagaac 364
               |||||||| |||||  | ||||||||||||||||||||||||||||| ||||| ||| | 
Sbjct: 2521999 tccaaggacctggcccaggccatcggtatcaccgaacagaacctgtcgctgctcaagcag 2522058

                                                                           
Query: 365     ggcaaggtgaagggcatccgcctcgacaccctggagaagatctgcgccttcctggactgc 424
               |||||||| |||||||| |||||||  |||||||||   |||||||||| |||||  |||
Sbjct: 2522059 ggcaaggtaaagggcattcgcctcgctaccctggaggccatctgcgcctacctggcgtgc 2522118

                       
Query: 425     cagccggg 432
               ||||||||
Sbjct: 2522119 cagccggg 2522126




 Score = 34.2 bits (17), Expect = 0.31
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 280     catcctggcgaagaaca 296
               |||||||||||||||||
Sbjct: 5300250 catcctggcgaagaaca 5300234




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 410     gccttcctggactgcc 425
               ||||||||||||||||
Sbjct: 1141767 gccttcctggactgcc 1141782




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 353     ctgctgaagaacggcaaggt 372
               |||||| |||||||||||||
Sbjct: 1341835 ctgctggagaacggcaaggt 1341816




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 424     ccagccgggcgacatc 439
               ||||||||||||||||
Sbjct: 2342662 ccagccgggcgacatc 2342677




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 379     catccgcctcgacaccctgg 398
               ||||||||||| ||||||||
Sbjct: 3449772 catccgcctcgccaccctgg 3449791




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 423     gccagccgggcgacatcctg 442
               |||||||||||||| |||||
Sbjct: 4387488 gccagccgggcgacgtcctg 4387507




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 351     ccctgctgaagaacggcaag 370
               |||||||||||||| |||||
Sbjct: 5494507 ccctgctgaagaaccgcaag 5494488




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 154     gcctacgagttcctcaaggc 173
               ||||||||||| ||||||||
Sbjct: 5516442 gcctacgagttgctcaaggc 5516461




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 286     ggcgaagaacaaggtc 301
               ||||||||||||||||
Sbjct: 6154665 ggcgaagaacaaggtc 6154680




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 313    gctggcggaagccat 327
              |||||||||||||||
Sbjct: 443971 gctggcggaagccat 443957




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 386    ctcgacaccctggagaaga 404
              |||| ||||||||||||||
Sbjct: 489130 ctcgccaccctggagaaga 489148




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 186    ctcgttcggcctgat 200
              |||||||||||||||
Sbjct: 828211 ctcgttcggcctgat 828197




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 306    ccaaggagctggcgg 320
              |||||||||||||||
Sbjct: 833858 ccaaggagctggcgg 833872




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 140     tcacttccgaagcgg 154
               |||||||||||||||
Sbjct: 1039566 tcacttccgaagcgg 1039552




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 357     tgaagaacggcaagg 371
               |||||||||||||||
Sbjct: 1174385 tgaagaacggcaagg 1174399




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 159     cgagttcctcaaggc 173
               |||||||||||||||
Sbjct: 1216444 cgagttcctcaaggc 1216458




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 357     tgaagaacggcaagg 371
               |||||||||||||||
Sbjct: 1959385 tgaagaacggcaagg 1959371




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 375     agggcatccgcctcg 389
               |||||||||||||||
Sbjct: 2005161 agggcatccgcctcg 2005175




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 363     acggcaaggtgaagggcat 381
               |||||| ||||||||||||
Sbjct: 3707850 acggcacggtgaagggcat 3707832




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 311     gagctggcggaagcc 325
               |||||||||||||||
Sbjct: 3849002 gagctggcggaagcc 3849016




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 377     ggcatccgcctcgac 391
               |||||||||||||||
Sbjct: 4022028 ggcatccgcctcgac 4022014




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 314     ctggcggaagccatc 328
               |||||||||||||||
Sbjct: 4270470 ctggcggaagccatc 4270484




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 362     aacggcaaggtgaag 376
               |||||||||||||||
Sbjct: 4404284 aacggcaaggtgaag 4404270




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 423     gccagccgggcgaca 437
               |||||||||||||||
Sbjct: 5010579 gccagccgggcgaca 5010565




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 361     gaacggcaaggtgaa 375
               |||||||||||||||
Sbjct: 5214809 gaacggcaaggtgaa 5214795




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 415     cctggactgccagccgggcgaca 437
               ||||| || ||||||||||||||
Sbjct: 5370728 cctgggctaccagccgggcgaca 5370750




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 165     cctcaaggcgatctt 179
               |||||||||||||||
Sbjct: 5542331 cctcaaggcgatctt 5542345




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 445     atacgtcgcgggagcatca 463
               ||||||||||| |||||||
Sbjct: 6122558 atacgtcgcggcagcatca 6122576




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 316     ggcggaagccatcggtatc 334
               ||||||||||| |||||||
Sbjct: 6137364 ggcggaagccagcggtatc 6137382




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 415     cctggactgccagccgggc 433
               ||||||| |||||||||||
Sbjct: 6143098 cctggaccgccagccgggc 6143116




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 389     gacaccctggagaag 403
               |||||||||||||||
Sbjct: 6154027 gacaccctggagaag 6154041




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 377     ggcatccgcctcgac 391
               |||||||||||||||
Sbjct: 6276485 ggcatccgcctcgac 6276499




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 363     acggcaaggtgaagg 377
               |||||||||||||||
Sbjct: 6442567 acggcaaggtgaagg 6442553




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3717
Number of Sequences: 1
Number of extensions: 3717
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of query: 937
length of database: 6,534,396
effective HSP length: 16
effective length of query: 921
effective length of database: 6,534,380
effective search space: 6018163980
effective search space used: 6018163980
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)