BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (906 letters)

Distribution of 30 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           297   1e-80 



>GCTS_68 
          Length = 6534396

 Score =  297 bits (150), Expect = 1e-80
 Identities = 159/162 (98%)
 Strand = Plus / Plus

                                                                          
Query: 63     taggcccagcggaagcgctgcttcttgaagtcgatgaaggtatcgggcatcaccaccttg 122
              |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 566120 taggcccagcggaagcgctgcttcttgaagtcgatgaaggtatcgggcatcacccccttg 566179

                                                                          
Query: 123    ccgtagctgcgctcgaagtaggcggccgacaggcccttctcgaacacccgcaggcccagc 182
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566180 ccgtagctgcgctcgaagtaggcggccgacaggcccttctcgaacacccgcaggcccagc 566239

                                                        
Query: 183    tcggcgtcttcggtgatgcaccattccggccataccagctcg 224
              |||||||||||||||||||||||||||||||||  |||||||
Sbjct: 566240 tcggcgtcttcggtgatgcaccattccggccatctcagctcg 566281






 Score = 36.2 bits (18), Expect = 0.075
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 490     gggcagggaaaccccggg 507
               ||||||||||||||||||
Sbjct: 1599917 gggcagggaaaccccggg 1599900






 Score = 36.2 bits (18), Expect = 0.075
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 173     caggcccagctcggcgtc 190
               ||||||||||||||||||
Sbjct: 6018959 caggcccagctcggcgtc 6018942






 Score = 34.2 bits (17), Expect = 0.30
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 120     ttgccgtagctgcgctc 136
               |||||||||||||||||
Sbjct: 6220598 ttgccgtagctgcgctc 6220614






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                  
Query: 168    acccgcaggcccagctcggc 187
              |||||| |||||||||||||
Sbjct: 279054 acccgctggcccagctcggc 279073






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 173     caggcccagctcggcg 188
               ||||||||||||||||
Sbjct: 1255791 caggcccagctcggcg 1255806






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 94      cgatgaaggtatcgggcatc 113
               ||||||||||||||| ||||
Sbjct: 1510829 cgatgaaggtatcggacatc 1510848






 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 179     cagctcggcgtcttcg 194
               ||||||||||||||||
Sbjct: 2341216 cagctcggcgtcttcg 2341201






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 487    cgggggcagggaaac 501
              |||||||||||||||
Sbjct: 588525 cgggggcagggaaac 588539






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 105     tcgggcatcaccacc 119
               |||||||||||||||
Sbjct: 1337585 tcgggcatcaccacc 1337599






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 171     cgcaggcccagctcg 185
               |||||||||||||||
Sbjct: 1581966 cgcaggcccagctcg 1581980






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 184     cggcgtcttcggtga 198
               |||||||||||||||
Sbjct: 1626460 cggcgtcttcggtga 1626446






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 171     cgcaggcccagctcg 185
               |||||||||||||||
Sbjct: 1665697 cgcaggcccagctcg 1665683






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 627     ggaaacccttccagc 641
               |||||||||||||||
Sbjct: 2720967 ggaaacccttccagc 2720981






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 174     aggcccagctcggcg 188
               |||||||||||||||
Sbjct: 2984892 aggcccagctcggcg 2984906






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 199     tgcaccattccggcc 213
               |||||||||||||||
Sbjct: 3005049 tgcaccattccggcc 3005063






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 187     cgtcttcggtgatgc 201
               |||||||||||||||
Sbjct: 3142495 cgtcttcggtgatgc 3142481






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 176     gcccagctcggcgtc 190
               |||||||||||||||
Sbjct: 3738308 gcccagctcggcgtc 3738294






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 290     gtgggacaactccgc 304
               |||||||||||||||
Sbjct: 3915648 gtgggacaactccgc 3915662






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 176     gcccagctcggcgtc 190
               |||||||||||||||
Sbjct: 4522898 gcccagctcggcgtc 4522884






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 143     ggcggccgacaggcc 157
               |||||||||||||||
Sbjct: 4891051 ggcggccgacaggcc 4891037






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 73      ggaagcgctgcttct 87
               |||||||||||||||
Sbjct: 5181120 ggaagcgctgcttct 5181106






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 167     cacccgcaggcccagctcg 185
               |||| ||||||||||||||
Sbjct: 5269362 caccggcaggcccagctcg 5269380






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 167     cacccgcaggcccagctcg 185
               |||||||||||||| ||||
Sbjct: 5373528 cacccgcaggcccatctcg 5373546






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 173     caggcccagctcggc 187
               |||||||||||||||
Sbjct: 5520071 caggcccagctcggc 5520085






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 167     cacccgcaggcccagctcg 185
               ||||||||||||| |||||
Sbjct: 5597367 cacccgcaggcccggctcg 5597385






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 71      gcggaagcgctgctt 85
               |||||||||||||||
Sbjct: 5700272 gcggaagcgctgctt 5700258






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 173     caggcccagctcggc 187
               |||||||||||||||
Sbjct: 5812778 caggcccagctcggc 5812764






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 825     ttgttcttcccggcc 839
               |||||||||||||||
Sbjct: 5886742 ttgttcttcccggcc 5886756






 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 155     gcccttctcgaacacccgc 173
               ||||| |||||||||||||
Sbjct: 6171656 gccctactcgaacacccgc 6171638






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3366
Number of Sequences: 1
Number of extensions: 3366
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of query: 906
length of database: 6,534,396
effective HSP length: 16
effective length of query: 890
effective length of database: 6,534,380
effective search space: 5815598200
effective search space used: 5815598200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)