BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (898 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           123   4e-28 

>GCTS_68 
          Length = 6534396

 Score =  123 bits (62), Expect = 4e-28
 Identities = 67/69 (97%)
 Strand = Plus / Plus

                                                                           
Query: 64      tatttcccctccaacctgatcgangacctctacctcagcaacggcatgagcgccggtaat 123
               |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 1426695 tatttcccctccaacctgatcgagaacctctacctcagcaacggcatgagcgccggtaat 1426754

                        
Query: 124     accctggcc 132
               |||||||||
Sbjct: 1426755 accctggcc 1426763




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 229    taatctcccttctttttttt 248
              ||||||||||||||| ||||
Sbjct: 200156 taatctcccttctttctttt 200137




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 106     ggcatgagcgccggta 121
               ||||||||||||||||
Sbjct: 2287578 ggcatgagcgccggta 2287563




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 392    tctttttttcttctt 406
              |||||||||||||||
Sbjct: 934950 tctttttttcttctt 934936




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 757     ctgtccgccctggtc 771
               |||||||||||||||
Sbjct: 1447157 ctgtccgccctggtc 1447143




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 379     gccctctccctcctc 393
               |||||||||||||||
Sbjct: 2663232 gccctctccctcctc 2663246




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 395     ttttttcttcttttttttt 413
               ||||||||||| |||||||
Sbjct: 2922995 ttttttcttctgttttttt 2922977




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 26/30 (86%)
 Strand = Plus / Minus

                                             
Query: 75      caacctgatcgangacctctacctcagcaa 104
               |||||||||||| | || | ||||||||||
Sbjct: 3198199 caacctgatcgaggtccgcgacctcagcaa 3198170




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 762     cgccctggtccagag 776
               |||||||||||||||
Sbjct: 3737058 cgccctggtccagag 3737072




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 88      gacctctacctcagc 102
               |||||||||||||||
Sbjct: 5040066 gacctctacctcagc 5040080




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 762     cgccctggtccagag 776
               |||||||||||||||
Sbjct: 6273893 cgccctggtccagag 6273879




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1696
Number of Sequences: 1
Number of extensions: 1696
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 898
length of database: 6,534,396
effective HSP length: 16
effective length of query: 882
effective length of database: 6,534,380
effective search space: 5763323160
effective search space used: 5763323160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)