BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (185 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           188   2e-48 

>GCTS_68 
          Length = 6534396

 Score =  188 bits (95), Expect = 2e-48
 Identities = 98/99 (98%)
 Strand = Plus / Plus

                                                                          
Query: 60     tatcttcttttcggtggcgttcgactcctgcgtctgcgaagtgttaccggagcaactacg 119
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782005 tatcttcttttcggtggcgttcgactcctgcgtctgcgaagtgttaccggagcaactacg 782064

                                                     
Query: 120    ccggagcgcaattcgatttcaggttatacccgcgacctc 158
              |||||||||||||||||||||||||||| ||||||||||
Sbjct: 782065 ccggagcgcaattcgatttcaggttatatccgcgacctc 782103




 Score = 28.2 bits (14), Expect = 3.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 170    ggcctggccatgta 183
              ||||||||||||||
Sbjct: 295777 ggcctggccatgta 295790




 Score = 28.2 bits (14), Expect = 3.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 158    ccatcatctgcagg 171
              ||||||||||||||
Sbjct: 988622 ccatcatctgcagg 988609




 Score = 28.2 bits (14), Expect = 3.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 72      ggtggcgttcgact 85
               ||||||||||||||
Sbjct: 1658997 ggtggcgttcgact 1659010




 Score = 28.2 bits (14), Expect = 3.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 86      cctgcgtctgcgaa 99
               ||||||||||||||
Sbjct: 4021414 cctgcgtctgcgaa 4021427




 Score = 28.2 bits (14), Expect = 3.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 89      gcgtctgcgaagtg 102
               ||||||||||||||
Sbjct: 5866590 gcgtctgcgaagtg 5866577




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 800
Number of Sequences: 1
Number of extensions: 800
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 185
length of database: 6,534,396
effective HSP length: 15
effective length of query: 170
effective length of database: 6,534,381
effective search space: 1110844770
effective search space used: 1110844770
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)