BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (197 letters)

Distribution of 58 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           232   1e-61 



>GCTS_68 
          Length = 6534396

 Score =  232 bits (117), Expect = 1e-61
 Identities = 123/125 (98%)
 Strand = Plus / Minus

                                                                           
Query: 60      tattcgatccagcgcagcgtcgacgacgcgctcaacagcccgcaaccggacacccgggtc 119
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6365704 tattcgatccagcgcagcgtcgacgacgcgctcaacagcccgcaaccggacacccgggtc 6365645

                                                                           
Query: 120     gacggcaccctgaaggtcgccgccagctataccgtgatgggctatttcctcccccatcat 179
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 6365644 gacggcaccctgaaggtcgccgccagctataccgtgatgggctatttcctcccccaccac 6365585

                    
Query: 180     ctgca 184
               |||||
Sbjct: 6365584 ctgca 6365580






 Score = 38.2 bits (19), Expect = 0.004
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 110     cacccgggtcgacggcacc 128
               |||||||||||||||||||
Sbjct: 5972705 cacccgggtcgacggcacc 5972687






 Score = 34.2 bits (17), Expect = 0.061
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 119     cgacggcaccctgaagg 135
               |||||||||||||||||
Sbjct: 5015079 cgacggcaccctgaagg 5015063






 Score = 32.2 bits (16), Expect = 0.24
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 133     aggtcgccgccagcta 148
               ||||||||||||||||
Sbjct: 2158953 aggtcgccgccagcta 2158968






 Score = 32.2 bits (16), Expect = 0.24
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 108     gacacccgggtcgacg 123
               ||||||||||||||||
Sbjct: 3229985 gacacccgggtcgacg 3229970






 Score = 32.2 bits (16), Expect = 0.24
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 110     cacccgggtcgacggc 125
               ||||||||||||||||
Sbjct: 5194512 cacccgggtcgacggc 5194497






 Score = 32.2 bits (16), Expect = 0.24
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 107     ggacacccgggtcgac 122
               ||||||||||||||||
Sbjct: 5328860 ggacacccgggtcgac 5328875






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 123    ggcaccctgaaggtc 137
              |||||||||||||||
Sbjct: 140431 ggcaccctgaaggtc 140417






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 139    ccgccagctataccg 153
              |||||||||||||||
Sbjct: 334379 ccgccagctataccg 334365






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 172    cccatcatctgcagg 186
              |||||||||||||||
Sbjct: 988623 cccatcatctgcagg 988609






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 75      agcgtcgacgacgcg 89
               |||||||||||||||
Sbjct: 1103185 agcgtcgacgacgcg 1103199






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 126     accctgaaggtcgcc 140
               |||||||||||||||
Sbjct: 1160185 accctgaaggtcgcc 1160171






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 64      cgatccagcgcagcg 78
               |||||||||||||||
Sbjct: 1637654 cgatccagcgcagcg 1637640






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 127     ccctgaaggtcgccg 141
               |||||||||||||||
Sbjct: 3408832 ccctgaaggtcgccg 3408846






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 131     gaaggtcgccgccagctataccg 153
               |||| ||| ||||||||||||||
Sbjct: 3450294 gaagctcggcgccagctataccg 3450316






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 66      atccagcgcagcgtcgacg 84
               |||||||||||| ||||||
Sbjct: 4152839 atccagcgcagcctcgacg 4152821






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 112     cccgggtcgacggca 126
               |||||||||||||||
Sbjct: 4176405 cccgggtcgacggca 4176419






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 73      gcagcgtcgacgacg 87
               |||||||||||||||
Sbjct: 4393120 gcagcgtcgacgacg 4393134






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 118     tcgacggcaccctgaaggtcgcc 140
               |||||||||||| ||| ||||||
Sbjct: 5497490 tcgacggcacccagaacgtcgcc 5497512






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 66      atccagcgcagcgtc 80
               |||||||||||||||
Sbjct: 5595557 atccagcgcagcgtc 5595571






 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 63      tcgatccagcgcagc 77
               |||||||||||||||
Sbjct: 6319890 tcgatccagcgcagc 6319876






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 122    cggcaccctgaagg 135
              ||||||||||||||
Sbjct: 609300 cggcaccctgaagg 609313






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 118    tcgacggcaccctg 131
              ||||||||||||||
Sbjct: 701826 tcgacggcaccctg 701839






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                
Query: 69     cagcgcagcgtcgacgac 86
              ||||||||||||| ||||
Sbjct: 759036 cagcgcagcgtcgccgac 759053






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 75     agcgtcgacgacgc 88
              ||||||||||||||
Sbjct: 937922 agcgtcgacgacgc 937909






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 65      gatccagcgcagcg 78
               ||||||||||||||
Sbjct: 1056813 gatccagcgcagcg 1056800






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 67      tccagcgcagcgtc 80
               ||||||||||||||
Sbjct: 1706019 tccagcgcagcgtc 1706006






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 79      tcgacgacgcgctc 92
               ||||||||||||||
Sbjct: 1851308 tcgacgacgcgctc 1851295






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 133     aggtcgccgccagc 146
               ||||||||||||||
Sbjct: 1861747 aggtcgccgccagc 1861760






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 140     cgccagctataccg 153
               ||||||||||||||
Sbjct: 1967067 cgccagctataccg 1967080






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 133     aggtcgccgccagc 146
               ||||||||||||||
Sbjct: 2056943 aggtcgccgccagc 2056956






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 74      cagcgtcgacgacg 87
               ||||||||||||||
Sbjct: 2065324 cagcgtcgacgacg 2065311






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 116     ggtcgacggcaccc 129
               ||||||||||||||
Sbjct: 2112519 ggtcgacggcaccc 2112506






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 133     aggtcgccgccagc 146
               ||||||||||||||
Sbjct: 2167162 aggtcgccgccagc 2167149






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 68      ccagcgcagcgtcg 81
               ||||||||||||||
Sbjct: 2180822 ccagcgcagcgtcg 2180809






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 65      gatccagcgcagcgtcga 82
               ||||||||||| ||||||
Sbjct: 2402683 gatccagcgcaacgtcga 2402666






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 182     gcaggcctggccaa 195
               ||||||||||||||
Sbjct: 2486623 gcaggcctggccaa 2486610






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 133     aggtcgccgccagc 146
               ||||||||||||||
Sbjct: 2684205 aggtcgccgccagc 2684218






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 132     aaggtcgccgccag 145
               ||||||||||||||
Sbjct: 2692698 aaggtcgccgccag 2692711






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 133     aggtcgccgccagc 146
               ||||||||||||||
Sbjct: 3087039 aggtcgccgccagc 3087052






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 118     tcgacggcaccctg 131
               ||||||||||||||
Sbjct: 3744971 tcgacggcaccctg 3744958






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 116     ggtcgacggcaccc 129
               ||||||||||||||
Sbjct: 3968283 ggtcgacggcaccc 3968270






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 140     cgccagctataccg 153
               ||||||||||||||
Sbjct: 4096818 cgccagctataccg 4096831






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 118     tcgacggcaccctg 131
               ||||||||||||||
Sbjct: 4301337 tcgacggcaccctg 4301324






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 114     cgggtcgacggcaccctg 131
               |||||| |||||||||||
Sbjct: 4308820 cgggtctacggcaccctg 4308803






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 129     ctgaaggtcgccgc 142
               ||||||||||||||
Sbjct: 4685592 ctgaaggtcgccgc 4685579






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 182     gcaggcctggccaa 195
               ||||||||||||||
Sbjct: 4878623 gcaggcctggccaa 4878636






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 68      ccagcgcagcgtcg 81
               ||||||||||||||
Sbjct: 4881848 ccagcgcagcgtcg 4881861






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 118     tcgacggcaccctg 131
               ||||||||||||||
Sbjct: 5001742 tcgacggcaccctg 5001755






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 68      ccagcgcagcgtcg 81
               ||||||||||||||
Sbjct: 5286490 ccagcgcagcgtcg 5286477






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 133     aggtcgccgccagc 146
               ||||||||||||||
Sbjct: 5505947 aggtcgccgccagc 5505960






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 118     tcgacggcaccctg 131
               ||||||||||||||
Sbjct: 5676077 tcgacggcaccctg 5676064






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 126     accctgaaggtcgc 139
               ||||||||||||||
Sbjct: 5846413 accctgaaggtcgc 5846426






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 79      tcgacgacgcgctc 92
               ||||||||||||||
Sbjct: 5970952 tcgacgacgcgctc 5970965






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 119     cgacggcaccctga 132
               ||||||||||||||
Sbjct: 5972468 cgacggcaccctga 5972481






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 66      atccagcgcagcgt 79
               ||||||||||||||
Sbjct: 6219637 atccagcgcagcgt 6219624






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 125     caccctgaaggtcg 138
               ||||||||||||||
Sbjct: 6357209 caccctgaaggtcg 6357196






 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 119     cgacggcaccctga 132
               ||||||||||||||
Sbjct: 6386705 cgacggcaccctga 6386692






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1921
Number of Sequences: 1
Number of extensions: 1921
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of query: 197
length of database: 6,534,396
effective HSP length: 15
effective length of query: 182
effective length of database: 6,534,381
effective search space: 1189257342
effective search space used: 1189257342
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)