BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (1152 letters)

Distribution of 37 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           636   0.0   



>GCTS_68 
          Length = 6534396

 Score =  636 bits (321), Expect = 0.0
 Identities = 339/345 (98%)
 Strand = Plus / Minus

                                                                           
Query: 96      tacatcgccgccttgagtctcggccataaccgcacctttgttcgttttatggatgctgtg 155
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478973 tacatcgccgccttgagtctcggccataaccgcacctttgttcgttttatggatgctgtg 6478914

                                                                           
Query: 156     cgaacagcctagagaacccggcgcaggacgcaaatcggccggcaagagagttttctatca 215
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478913 cgaacagcctagagaacccggcgcaggacgcaaatcggccggcaagagagttttctatca 6478854

                                                                           
Query: 216     ggggaaaggaaagctctttgtaggaatcgccctacaaaaaagatgcaccccggaatgggc 275
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478853 ggggaaaggaaagctctttgtaggaatcgccctacaaaaaagatgcaccccggaatgggc 6478794

                                                                           
Query: 276     cagaccgctctgggaaggggctttcgagaagggcaaaggtttgcgcgccagcgctctccg 335
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478793 cagaccgctctgggaaggggctttcgagaagggcaaaggtttgcgcgccagcgctctccg 6478734

                                                                           
Query: 336     gctggcgcgcaacggcgtccttcgcgcttggcccagttctggaaacgctgctccagggcc 395
               |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 6478733 gctggcgcgcaacggcgtcctcagcgcttggcccagttctggaaacgctgctccagggcc 6478674

                                                            
Query: 396     tcgccgtgctccgcccagaaggccactgttatacccaccgtgttc 440
               ||||||||||||||||||||||||||  | |||||||||| ||||
Sbjct: 6478673 tcgccgtgctccgcccagaaggccacgttcatacccaccgcgttc 6478629






 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 338     tggcgcgcaacggcgtc 354
               |||||||||||||||||
Sbjct: 2374681 tggcgcgcaacggcgtc 2374665






 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 384     tgctccagggcctcgcc 400
               |||||||||||||||||
Sbjct: 2460966 tgctccagggcctcgcc 2460982






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 386    ctccagggcctcgccg 401
              ||||||||||||||||
Sbjct: 187693 ctccagggcctcgccg 187708






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 310    aaaggtttgcgcgccagcgc 329
              |||||| |||||||||||||
Sbjct: 345997 aaaggtatgcgcgccagcgc 345978






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 388    ccagggcctcgccgtgctcc 407
              |||||||||||| |||||||
Sbjct: 526255 ccagggcctcgcggtgctcc 526236






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 333     ccggctggcgcgcaacggcg 352
               |||||||||||||| |||||
Sbjct: 1480552 ccggctggcgcgcagcggcg 1480571






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 383     ctgctccagggcctcg 398
               ||||||||||||||||
Sbjct: 2524852 ctgctccagggcctcg 2524867






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 326     gcgctctccggctggc 341
               ||||||||||||||||
Sbjct: 3948438 gcgctctccggctggc 3948453






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 386     ctccagggcctcgccg 401
               ||||||||||||||||
Sbjct: 4134395 ctccagggcctcgccg 4134410






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 185     gcaaatcggccggcaa 200
               ||||||||||||||||
Sbjct: 4447500 gcaaatcggccggcaa 4447515






 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 386     ctccagggcctcgccg 401
               ||||||||||||||||
Sbjct: 5750093 ctccagggcctcgccg 5750108






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 337    ctggcgcgcaacggc 351
              |||||||||||||||
Sbjct: 526338 ctggcgcgcaacggc 526324






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 387    tccagggcctcgccg 401
              |||||||||||||||
Sbjct: 586551 tccagggcctcgccg 586537






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 382    gctgctccagggcct 396
              |||||||||||||||
Sbjct: 612556 gctgctccagggcct 612570






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 314    gtttgcgcgccagcg 328
              |||||||||||||||
Sbjct: 893087 gtttgcgcgccagcg 893073






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 335     ggctggcgcgcaacg 349
               |||||||||||||||
Sbjct: 1175557 ggctggcgcgcaacg 1175571






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 218     ggaaaggaaagctct 232
               |||||||||||||||
Sbjct: 1659039 ggaaaggaaagctct 1659053






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 377     gaaacgctgctccag 391
               |||||||||||||||
Sbjct: 1985797 gaaacgctgctccag 1985811






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 395     ctcgccgtgctccgc 409
               |||||||||||||||
Sbjct: 2112774 ctcgccgtgctccgc 2112788






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 382     gctgctccagggcct 396
               |||||||||||||||
Sbjct: 2178284 gctgctccagggcct 2178298






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 331     ctccggctggcgcgc 345
               |||||||||||||||
Sbjct: 2378578 ctccggctggcgcgc 2378592






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 392     ggcctcgccgtgctc 406
               |||||||||||||||
Sbjct: 2457644 ggcctcgccgtgctc 2457630






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 1079    catccgcatactgcc 1093
               |||||||||||||||
Sbjct: 3445895 catccgcatactgcc 3445881






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 262     accccggaatgggcc 276
               |||||||||||||||
Sbjct: 3491438 accccggaatgggcc 3491452






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 436     tgttcatcttctgca 450
               |||||||||||||||
Sbjct: 4390749 tgttcatcttctgca 4390735






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 97      acatcgccgccttga 111
               |||||||||||||||
Sbjct: 4477462 acatcgccgccttga 4477448






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 99      atcgccgccttgagt 113
               |||||||||||||||
Sbjct: 4646004 atcgccgccttgagt 4646018






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 338     tggcgcgcaacggcgtcct 356
               |||||||||||||| ||||
Sbjct: 4933054 tggcgcgcaacggcttcct 4933036






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 968     gcacatccaactgct 982
               |||||||||||||||
Sbjct: 5021051 gcacatccaactgct 5021037






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 264     cccggaatgggccag 278
               |||||||||||||||
Sbjct: 5294930 cccggaatgggccag 5294944






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 431     caccgtgttcatcttctgc 449
               ||||||||||| |||||||
Sbjct: 5359081 caccgtgttcagcttctgc 5359099






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 338     tggcgcgcaacggcg 352
               |||||||||||||||
Sbjct: 5392248 tggcgcgcaacggcg 5392262






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 450     aggtctggccagcct 464
               |||||||||||||||
Sbjct: 5610010 aggtctggccagcct 5610024






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 348     cggcgtccttcgcgc 362
               |||||||||||||||
Sbjct: 5625280 cggcgtccttcgcgc 5625294






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 348     cggcgtccttcgcgc 362
               |||||||||||||||
Sbjct: 6162912 cggcgtccttcgcgc 6162926






 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 337     ctggcgcgcaacggc 351
               |||||||||||||||
Sbjct: 6246337 ctggcgcgcaacggc 6246323






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4268
Number of Sequences: 1
Number of extensions: 4268
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of query: 1152
length of database: 6,534,396
effective HSP length: 17
effective length of query: 1135
effective length of database: 6,534,379
effective search space: 7416520165
effective search space used: 7416520165
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)