BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (70 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                            28   1.1   

>GCTS_68 
          Length = 6534396

 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 22      ggctgagggtgcga 35
               ||||||||||||||
Sbjct: 1909258 ggctgagggtgcga 1909271




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 27      agggtgcgagcagg 40
               ||||||||||||||
Sbjct: 6160524 agggtgcgagcagg 6160537




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 1       ggaagggggagtgg 14
               ||||||||||||||
Sbjct: 6515719 ggaagggggagtgg 6515706




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 11     gtgggagaggggg 23
              |||||||||||||
Sbjct: 333723 gtgggagaggggg 333735




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 29     ggtgcgagcagga 41
              |||||||||||||
Sbjct: 517465 ggtgcgagcagga 517477




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 21      gggctgagggtgc 33
               |||||||||||||
Sbjct: 5120500 gggctgagggtgc 5120488




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 2       gaagggggagtgg 14
               |||||||||||||
Sbjct: 5242276 gaagggggagtgg 5242264




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 21      gggctgagggtgc 33
               |||||||||||||
Sbjct: 5834713 gggctgagggtgc 5834725




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 94
Number of Sequences: 1
Number of extensions: 94
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 70
length of database: 6,534,396
effective HSP length: 14
effective length of query: 56
effective length of database: 6,534,382
effective search space: 365925392
effective search space used: 365925392
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)