BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (172 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           137   5e-33 

>GCTS_68 
          Length = 6534396

 Score =  137 bits (69), Expect = 5e-33
 Identities = 69/69 (100%)
 Strand = Plus / Minus

                                                                           
Query: 23      taaaggccaggcgatggagagccacgagttcattccttgaattcagagaggcgcgatact 82
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5842494 taaaggccaggcgatggagagccacgagttcattccttgaattcagagaggcgcgatact 5842435

                        
Query: 83      ggcccagcg 91
               |||||||||
Sbjct: 5842434 ggcccagcg 5842426




 Score =  105 bits (53), Expect = 2e-23
 Identities = 59/61 (96%)
 Strand = Plus / Minus

                                                                           
Query: 112     atattccgatatccgtcttccatgagtcggacaatccgggagaaaggcacaaggccatct 171
               ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5842405 atattccgaaatccgtcttccatgagtcggacaatccgggagtaaggcacaaggccatct 5842346

                
Query: 172     g 172
               |
Sbjct: 5842345 g 5842345




 Score = 36.2 bits (18), Expect = 0.013
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 81      ctggcccagcgcatcatc 98
               ||||||||||||||||||
Sbjct: 4625464 ctggcccagcgcatcatc 4625447




 Score = 32.2 bits (16), Expect = 0.21
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 83      ggcccagcgcatcatc 98
               ||||||||||||||||
Sbjct: 5081229 ggcccagcgcatcatc 5081214




 Score = 30.2 bits (15), Expect = 0.82
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 80     actggcccagcgcat 94
              |||||||||||||||
Sbjct: 494725 actggcccagcgcat 494711




 Score = 30.2 bits (15), Expect = 0.82
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 25      aaggccaggcgatgg 39
               |||||||||||||||
Sbjct: 1338060 aaggccaggcgatgg 1338046




 Score = 30.2 bits (15), Expect = 0.82
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 28      gccaggcgatggagagcca 46
               ||||||||||||| |||||
Sbjct: 1756574 gccaggcgatggatagcca 1756592




 Score = 30.2 bits (15), Expect = 0.82
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 84      gcccagcgcatcatc 98
               |||||||||||||||
Sbjct: 4031083 gcccagcgcatcatc 4031097




 Score = 30.2 bits (15), Expect = 0.82
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 81      ctggcccagcgcatc 95
               |||||||||||||||
Sbjct: 6388731 ctggcccagcgcatc 6388717




 Score = 28.2 bits (14), Expect = 3.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 24     aaaggccaggcgat 37
              ||||||||||||||
Sbjct: 750635 aaaggccaggcgat 750648




 Score = 28.2 bits (14), Expect = 3.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 81      ctggcccagcgcat 94
               ||||||||||||||
Sbjct: 1265884 ctggcccagcgcat 1265871




 Score = 28.2 bits (14), Expect = 3.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 26      aggccaggcgatgg 39
               ||||||||||||||
Sbjct: 1595177 aggccaggcgatgg 1595164




 Score = 28.2 bits (14), Expect = 3.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 88      agcgcatcatctgc 101
               ||||||||||||||
Sbjct: 2125078 agcgcatcatctgc 2125065




 Score = 28.2 bits (14), Expect = 3.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 81      ctggcccagcgcat 94
               ||||||||||||||
Sbjct: 2160564 ctggcccagcgcat 2160577




 Score = 28.2 bits (14), Expect = 3.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 26      aggccaggcgatgg 39
               ||||||||||||||
Sbjct: 2313857 aggccaggcgatgg 2313870




 Score = 28.2 bits (14), Expect = 3.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 84      gcccagcgcatcat 97
               ||||||||||||||
Sbjct: 3000175 gcccagcgcatcat 3000188




 Score = 28.2 bits (14), Expect = 3.2
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 89      gcgcatcatctgcaggcc 106
               ||||| ||||||||||||
Sbjct: 4473664 gcgcagcatctgcaggcc 4473681




 Score = 28.2 bits (14), Expect = 3.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 24      aaaggccaggcgat 37
               ||||||||||||||
Sbjct: 4992384 aaaggccaggcgat 4992371




 Score = 28.2 bits (14), Expect = 3.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 79      tactggcccagcgc 92
               ||||||||||||||
Sbjct: 6110757 tactggcccagcgc 6110770




 Score = 28.2 bits (14), Expect = 3.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 82      tggcccagcgcatc 95
               ||||||||||||||
Sbjct: 6157233 tggcccagcgcatc 6157246




 Score = 28.2 bits (14), Expect = 3.2
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 38      ggagagccacgagttcat 55
               ||||| ||||||||||||
Sbjct: 6237096 ggagatccacgagttcat 6237113




 Score = 28.2 bits (14), Expect = 3.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 81      ctggcccagcgcat 94
               ||||||||||||||
Sbjct: 6333094 ctggcccagcgcat 6333107




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1014
Number of Sequences: 1
Number of extensions: 1014
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of query: 172
length of database: 6,534,396
effective HSP length: 15
effective length of query: 157
effective length of database: 6,534,381
effective search space: 1025897817
effective search space used: 1025897817
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)