BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (198 letters)

Distribution of 69 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           345   1e-95 
>GCTS_68 
          Length = 6534396

 Score =  345 bits (174), Expect = 1e-95
 Identities = 192/198 (96%)
 Strand = Plus / Minus

                                                                           
Query: 1       gatcacctccttgatctcgtcgcgtgtcagcccgttcatcttcgccgcgctcagatgcag 60
               |||||| |||||||||||||||||  ||| ||||||  ||||||||||||||||||||||
Sbjct: 6053765 gatcacttccttgatctcgtcgcggctcaccccgttgttcttcgccgcgctcagatgcag 6053706

                                                                           
Query: 61      cttgagttcctcgttgcggttcatgccgatcagcatggcgatggtgaccaggctgcgggt 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6053705 cttgagttcctcgttgcggttcatgccgatcagcatggcgatggtgaccaggctgcgggt 6053646

                                                                           
Query: 121     gtgtcgcggcagccccggacgggtccagatgtcgccccaggcgtggcgggtgatcatctc 180
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6053645 gtgtcgcggcagccccggacgggtccagatgtcgccccaggcgtggcgggtgatcatctc 6053586

                                 
Query: 181     ctggaactcttcgttgaa 198
               ||||||||||||||||||
Sbjct: 6053585 ctggaactcttcgttgaa 6053568

 Score = 38.2 bits (19), Expect = 0.004
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 65      agttcctcgttgcggttca 83
               |||||||||||||||||||
Sbjct: 2560481 agttcctcgttgcggttca 2560499

 Score = 36.2 bits (18), Expect = 0.015
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 33     cgttcatcttcgccgcgctcag 54
              ||||||||| ||||||||||||
Sbjct: 107808 cgttcatctgcgccgcgctcag 107829

 Score = 34.2 bits (17), Expect = 0.061
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 98     gcgatggtgaccaggct 114
              |||||||||||||||||
Sbjct: 998188 gcgatggtgaccaggct 998204

 Score = 34.2 bits (17), Expect = 0.061
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 8       tccttgatctcgtcgcg 24
               |||||||||||||||||
Sbjct: 1593303 tccttgatctcgtcgcg 1593287

 Score = 32.2 bits (16), Expect = 0.24
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 84      tgccgatcagcatggcgatg 103
               |||||||||||| |||||||
Sbjct: 1161177 tgccgatcagcagggcgatg 1161196

 Score = 32.2 bits (16), Expect = 0.24
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                       
Query: 80      ttcatgccgatcagcatggcgatg 103
               |||||||||||||||  |||||||
Sbjct: 1593342 ttcatgccgatcagcgcggcgatg 1593319

 Score = 32.2 bits (16), Expect = 0.24
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 84      tgccgatcagcatggc 99
               ||||||||||||||||
Sbjct: 3010905 tgccgatcagcatggc 3010890

 Score = 32.2 bits (16), Expect = 0.24
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 9       ccttgatctcgtcgcg 24
               ||||||||||||||||
Sbjct: 3101465 ccttgatctcgtcgcg 3101480

 Score = 32.2 bits (16), Expect = 0.24
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 85      gccgatcagcatggcg 100
               ||||||||||||||||
Sbjct: 4460049 gccgatcagcatggcg 4460034

 Score = 32.2 bits (16), Expect = 0.24
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 60      gcttgagttcctcgtt 75
               ||||||||||||||||
Sbjct: 5882802 gcttgagttcctcgtt 5882817

 Score = 32.2 bits (16), Expect = 0.24
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 87      cgatcagcatggcgat 102
               ||||||||||||||||
Sbjct: 6488808 cgatcagcatggcgat 6488793

 Score = 30.2 bits (15), Expect = 0.95
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 93     gcatggcgatggtgaccag 111
              ||||||||||| |||||||
Sbjct: 517541 gcatggcgatgttgaccag 517559

 Score = 30.2 bits (15), Expect = 0.95
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 82     catgccgatcagcatggcg 100
              |||||||||||||| ||||
Sbjct: 934544 catgccgatcagcacggcg 934562

 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 148     gatgtcgccccaggc 162
               |||||||||||||||
Sbjct: 1003855 gatgtcgccccaggc 1003869

 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 26      gtcagcccgttcatc 40
               |||||||||||||||
Sbjct: 1467341 gtcagcccgttcatc 1467327

 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 82      catgccgatcagcat 96
               |||||||||||||||
Sbjct: 1635747 catgccgatcagcat 1635761

 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 78      ggttcatgccgatca 92
               |||||||||||||||
Sbjct: 2837917 ggttcatgccgatca 2837903

 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 120     tgtgtcgcggcagcc 134
               |||||||||||||||
Sbjct: 2998104 tgtgtcgcggcagcc 2998090

 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 94      catggcgatggtgac 108
               |||||||||||||||
Sbjct: 3467537 catggcgatggtgac 3467551

 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 85      gccgatcagcatggc 99
               |||||||||||||||
Sbjct: 3614039 gccgatcagcatggc 3614053

 Score = 30.2 bits (15), Expect = 0.95
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 97      ggcgatggtgaccag 111
               |||||||||||||||
Sbjct: 4751253 ggcgatggtgaccag 4751239

 Score = 30.2 bits (15), Expect = 0.95
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 6       cctccttgatctcgtcgcg 24
               |||| ||||||||||||||
Sbjct: 5167704 cctcgttgatctcgtcgcg 5167722

 Score = 30.2 bits (15), Expect = 0.95
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 84      tgccgatcagcatggcgat 102
               |||||||||||| ||||||
Sbjct: 6173894 tgccgatcagcacggcgat 6173876

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 20/22 (90%)
 Strand = Plus / Minus

                                    
Query: 57     gcagcttgagttcctcgttgcg 78
              |||||||||||| |||| ||||
Sbjct: 423413 gcagcttgagttgctcgctgcg 423392

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 37     catcttcgccgcgc 50
              ||||||||||||||
Sbjct: 460056 catcttcgccgcgc 460043

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 165    ggcgggtgatcatc 178
              ||||||||||||||
Sbjct: 604983 ggcgggtgatcatc 604996

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 106    gaccaggctgcggg 119
              ||||||||||||||
Sbjct: 612614 gaccaggctgcggg 612627

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 38     atcttcgccgcgct 51
              ||||||||||||||
Sbjct: 674237 atcttcgccgcgct 674224

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 91     cagcatggcgatgg 104
              ||||||||||||||
Sbjct: 716958 cagcatggcgatgg 716971

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                
Query: 85     gccgatcagcatggcgat 102
              ||||||||||| ||||||
Sbjct: 792419 gccgatcagcagggcgat 792436

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 4       cacctccttgatct 17
               ||||||||||||||
Sbjct: 1083209 cacctccttgatct 1083222

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 61      cttgagttcctcgt 74
               ||||||||||||||
Sbjct: 1084208 cttgagttcctcgt 1084195

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 9       ccttgatctcgtcg 22
               ||||||||||||||
Sbjct: 1279368 ccttgatctcgtcg 1279355

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 78      ggttcatgccgatcagca 95
               |||| |||||||||||||
Sbjct: 1291835 ggttgatgccgatcagca 1291818

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 91      cagcatggcgatgg 104
               ||||||||||||||
Sbjct: 1382677 cagcatggcgatgg 1382690

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 141     gggtccagatgtcg 154
               ||||||||||||||
Sbjct: 1456984 gggtccagatgtcg 1456997

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 93      gcatggcgatggtg 106
               ||||||||||||||
Sbjct: 1531394 gcatggcgatggtg 1531407

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 150     tgtcgccccaggcgtggc 167
               |||||| |||||||||||
Sbjct: 2020348 tgtcgctccaggcgtggc 2020331

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 108     ccaggctgcgggtg 121
               ||||||||||||||
Sbjct: 2069217 ccaggctgcgggtg 2069230

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 153     cgccccaggcgtggcggg 170
               ||||||||||| ||||||
Sbjct: 2213209 cgccccaggcgcggcggg 2213226

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 90      tcagcatggcgatggtga 107
               ||||||||||| ||||||
Sbjct: 2224274 tcagcatggcggtggtga 2224291

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 31      cccgttcatcttcg 44
               ||||||||||||||
Sbjct: 2324518 cccgttcatcttcg 2324505

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 171     tgatcatctcctgg 184
               ||||||||||||||
Sbjct: 2340347 tgatcatctcctgg 2340334

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 122     tgtcgcggcagccc 135
               ||||||||||||||
Sbjct: 2520399 tgtcgcggcagccc 2520386

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 180     cctggaactcttcg 193
               ||||||||||||||
Sbjct: 2617202 cctggaactcttcg 2617189

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 45      ccgcgctcagatgc 58
               ||||||||||||||
Sbjct: 2781946 ccgcgctcagatgc 2781959

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 37      catcttcgccgcgc 50
               ||||||||||||||
Sbjct: 2825905 catcttcgccgcgc 2825918

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 52      cagatgcagcttga 65
               ||||||||||||||
Sbjct: 3443410 cagatgcagcttga 3443423

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 4       cacctccttgatctcgtc 21
               ||||| ||||||||||||
Sbjct: 3593852 cacctgcttgatctcgtc 3593869

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 103     ggtgaccaggctgc 116
               ||||||||||||||
Sbjct: 3785952 ggtgaccaggctgc 3785939

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 103     ggtgaccaggctgc 116
               ||||||||||||||
Sbjct: 3874246 ggtgaccaggctgc 3874233

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 80      ttcatgccgatcag 93
               ||||||||||||||
Sbjct: 4197109 ttcatgccgatcag 4197122

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 20/22 (90%)
 Strand = Plus / Minus

                                     
Query: 27      tcagcccgttcatcttcgccgc 48
               ||||| || |||||||||||||
Sbjct: 4346690 tcagctcgatcatcttcgccgc 4346669

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 126     gcggcagccccgga 139
               ||||||||||||||
Sbjct: 4400990 gcggcagccccgga 4401003

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 148     gatgtcgccccagg 161
               ||||||||||||||
Sbjct: 4425060 gatgtcgccccagg 4425047

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 129     gcagccccggacgg 142
               ||||||||||||||
Sbjct: 4670974 gcagccccggacgg 4670961

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 100     gatggtgaccaggc 113
               ||||||||||||||
Sbjct: 4862823 gatggtgaccaggc 4862836

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 38      atcttcgccgcgct 51
               ||||||||||||||
Sbjct: 4892606 atcttcgccgcgct 4892619

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 85      gccgatcagcatggcgat 102
               ||||||||||| ||||||
Sbjct: 5052368 gccgatcagcagggcgat 5052385

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 37      catcttcgccgcgc 50
               ||||||||||||||
Sbjct: 5254254 catcttcgccgcgc 5254267

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 35      ttcatcttcgccgc 48
               ||||||||||||||
Sbjct: 5278486 ttcatcttcgccgc 5278473

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 109     caggctgcgggtgt 122
               ||||||||||||||
Sbjct: 5481372 caggctgcgggtgt 5481359

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 36      tcatcttcgccgcg 49
               ||||||||||||||
Sbjct: 5966629 tcatcttcgccgcg 5966616

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 37      catcttcgccgcgc 50
               ||||||||||||||
Sbjct: 6045502 catcttcgccgcgc 6045515

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 65      agttcctcgttgcg 78
               ||||||||||||||
Sbjct: 6196967 agttcctcgttgcg 6196954

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 9       ccttgatctcgtcg 22
               ||||||||||||||
Sbjct: 6381738 ccttgatctcgtcg 6381725

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 31      cccgttcatcttcg 44
               ||||||||||||||
Sbjct: 6384427 cccgttcatcttcg 6384414

 Score = 28.2 bits (14), Expect = 3.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 79      gttcatgccgatca 92
               ||||||||||||||
Sbjct: 6449611 gttcatgccgatca 6449598
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2183
Number of Sequences: 1
Number of extensions: 2183
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of query: 198
length of database: 6,534,396
effective HSP length: 15
effective length of query: 183
effective length of database: 6,534,381
effective search space: 1195791723
effective search space used: 1195791723
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)