BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (88 letters)

Distribution of 84 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           115   8e-27 

>GCTS_68 
          Length = 6534396

 Score =  115 bits (58), Expect = 8e-27
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                         
Query: 22      tacggcaagctggtccgccagttccccaccgcaggctcggcctatacctacgcgcaac 79
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1552133 tacggcaagctggtccgccagttccccaccgcaggctcggcctatacctacgcgcaac 1552190




 Score = 38.2 bits (19), Expect = 0.002
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 55      ggctcggcctatacctacg 73
               |||||||||||||||||||
Sbjct: 3429370 ggctcggcctatacctacg 3429352




 Score = 32.2 bits (16), Expect = 0.096
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 27      caagctggtccgccagttcc 46
               ||||||||||||| ||||||
Sbjct: 2357093 caagctggtccgcgagttcc 2357112




 Score = 32.2 bits (16), Expect = 0.096
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 24      cggcaagctggtccgc 39
               ||||||||||||||||
Sbjct: 5394715 cggcaagctggtccgc 5394700




 Score = 30.2 bits (15), Expect = 0.38
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 24      cggcaagctggtccgccag 42
               ||||||||||||| |||||
Sbjct: 2096576 cggcaagctggtcagccag 2096558




 Score = 30.2 bits (15), Expect = 0.38
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 24      cggcaagctggtccgccag 42
               |||||||||||| ||||||
Sbjct: 5132896 cggcaagctggtgcgccag 5132878




 Score = 30.2 bits (15), Expect = 0.38
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 24      cggcaagctggtccgccag 42
               ||||||||||||| |||||
Sbjct: 5848662 cggcaagctggtcagccag 5848680




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 23     acggcaagctggtc 36
              ||||||||||||||
Sbjct: 369542 acggcaagctggtc 369529




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 63     ctatacctacgcgc 76
              ||||||||||||||
Sbjct: 867247 ctatacctacgcgc 867260




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                
Query: 47     ccaccgcaggctcggcct 64
              |||||| |||||||||||
Sbjct: 929706 ccaccggaggctcggcct 929723




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 32      tggtccgccagttc 45
               ||||||||||||||
Sbjct: 1003100 tggtccgccagttc 1003087




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 65      atacctacgcgcaa 78
               ||||||||||||||
Sbjct: 1046423 atacctacgcgcaa 1046436




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 29      agctggtccgccagttcc 46
               |||||| |||||||||||
Sbjct: 1136091 agctggaccgccagttcc 1136108




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 23      acggcaagctggtc 36
               ||||||||||||||
Sbjct: 1372262 acggcaagctggtc 1372249




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 23      acggcaagctggtc 36
               ||||||||||||||
Sbjct: 1810477 acggcaagctggtc 1810490




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 22      tacggcaagctggt 35
               ||||||||||||||
Sbjct: 1892401 tacggcaagctggt 1892414




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 35      tccgccagttccccaccg 52
               |||||||||||| |||||
Sbjct: 1955185 tccgccagttcctcaccg 1955202




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 30      gctggtccgccagt 43
               ||||||||||||||
Sbjct: 2140975 gctggtccgccagt 2140988




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 70      tacgcgcaacatca 83
               ||||||||||||||
Sbjct: 2431631 tacgcgcaacatca 2431618




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 36      ccgccagttcccca 49
               ||||||||||||||
Sbjct: 2863205 ccgccagttcccca 2863218




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 22      tacggcaagctggt 35
               ||||||||||||||
Sbjct: 2864412 tacggcaagctggt 2864399




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 23      acggcaagctggtc 36
               ||||||||||||||
Sbjct: 3374752 acggcaagctggtc 3374765




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 24      cggcaagctggtcc 37
               ||||||||||||||
Sbjct: 4023703 cggcaagctggtcc 4023690




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 26      gcaagctggtccgc 39
               ||||||||||||||
Sbjct: 4848349 gcaagctggtccgc 4848362




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 23      acggcaagctggtc 36
               ||||||||||||||
Sbjct: 4916430 acggcaagctggtc 4916443




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 23      acggcaagctggtc 36
               ||||||||||||||
Sbjct: 5159810 acggcaagctggtc 5159797




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 46      cccaccgcaggctcggcc 63
               |||||| |||||||||||
Sbjct: 5975120 cccacctcaggctcggcc 5975137




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 23/26 (88%)
 Strand = Plus / Minus

                                         
Query: 46      cccaccgcaggctcggcctataccta 71
               |||| ||| |||||||||||| ||||
Sbjct: 6178102 cccatcgccggctcggcctattccta 6178077




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 27      caagctggtccgccagtt 44
               |||| |||||||||||||
Sbjct: 6202959 caaggtggtccgccagtt 6202942




 Score = 28.2 bits (14), Expect = 1.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 23      acggcaagctggtc 36
               ||||||||||||||
Sbjct: 6206116 acggcaagctggtc 6206103




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 52     gcaggctcggcct 64
              |||||||||||||
Sbjct: 107852 gcaggctcggcct 107840




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 30     gctggtccgccag 42
              |||||||||||||
Sbjct: 277178 gctggtccgccag 277190




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 27     caagctggtccgc 39
              |||||||||||||
Sbjct: 281428 caagctggtccgc 281440




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 24     cggcaagctggtc 36
              |||||||||||||
Sbjct: 301633 cggcaagctggtc 301621




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 23     acggcaagctggt 35
              |||||||||||||
Sbjct: 346000 acggcaagctggt 346012




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 17     cctgttacggcaa 29
              |||||||||||||
Sbjct: 482116 cctgttacggcaa 482128




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 16/17 (94%)
 Strand = Plus / Minus

                               
Query: 23     acggcaagctggtccgc 39
              |||||||||||| ||||
Sbjct: 638191 acggcaagctggaccgc 638175




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 50     ccgcaggctcggc 62
              |||||||||||||
Sbjct: 897171 ccgcaggctcggc 897159




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 51     cgcaggctcggcc 63
              |||||||||||||
Sbjct: 897398 cgcaggctcggcc 897386




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 63     ctatacctacgcg 75
              |||||||||||||
Sbjct: 937323 ctatacctacgcg 937311




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 70      tacgcgcaacatc 82
               |||||||||||||
Sbjct: 1274766 tacgcgcaacatc 1274778




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 24      cggcaagctggtc 36
               |||||||||||||
Sbjct: 1311698 cggcaagctggtc 1311710




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 72      cgcgcaacatcat 84
               |||||||||||||
Sbjct: 1393689 cgcgcaacatcat 1393701




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 24      cggcaagctggtc 36
               |||||||||||||
Sbjct: 1487345 cggcaagctggtc 1487333




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 24      cggcaagctggtc 36
               |||||||||||||
Sbjct: 1506339 cggcaagctggtc 1506351




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 23      acggcaagctggt 35
               |||||||||||||
Sbjct: 1823952 acggcaagctggt 1823964




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 23      acggcaagctggt 35
               |||||||||||||
Sbjct: 1840892 acggcaagctggt 1840880




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 33      ggtccgccagttc 45
               |||||||||||||
Sbjct: 1844292 ggtccgccagttc 1844304




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 16/17 (94%)
 Strand = Plus / Minus

                                
Query: 23      acggcaagctggtccgc 39
               |||||||||||| ||||
Sbjct: 1975664 acggcaagctggaccgc 1975648




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 16/17 (94%)
 Strand = Plus / Minus

                                
Query: 23      acggcaagctggtccgc 39
               |||||||||||| ||||
Sbjct: 1982207 acggcaagctggaccgc 1982191




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 24      cggcaagctggtc 36
               |||||||||||||
Sbjct: 2103851 cggcaagctggtc 2103839




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 34      gtccgccagttcc 46
               |||||||||||||
Sbjct: 2214067 gtccgccagttcc 2214079




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 51      cgcaggctcggcc 63
               |||||||||||||
Sbjct: 2272498 cgcaggctcggcc 2272486




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 30      gctggtccgccag 42
               |||||||||||||
Sbjct: 2346229 gctggtccgccag 2346241




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 34      gtccgccagttcc 46
               |||||||||||||
Sbjct: 2363127 gtccgccagttcc 2363115




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 50      ccgcaggctcggc 62
               |||||||||||||
Sbjct: 2381875 ccgcaggctcggc 2381887




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 24      cggcaagctggtc 36
               |||||||||||||
Sbjct: 2471502 cggcaagctggtc 2471490




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 30      gctggtccgccag 42
               |||||||||||||
Sbjct: 2661336 gctggtccgccag 2661324




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 16/17 (94%)
 Strand = Plus / Minus

                                
Query: 53      caggctcggcctatacc 69
               |||||||||||| ||||
Sbjct: 2720571 caggctcggcctgtacc 2720555




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 23      acggcaagctggt 35
               |||||||||||||
Sbjct: 2787333 acggcaagctggt 2787321




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 22      tacggcaagctgg 34
               |||||||||||||
Sbjct: 2850832 tacggcaagctgg 2850820




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 24      cggcaagctggtc 36
               |||||||||||||
Sbjct: 3058438 cggcaagctggtc 3058450




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 24      cggcaagctggtc 36
               |||||||||||||
Sbjct: 3105435 cggcaagctggtc 3105423




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 34      gtccgccagttcc 46
               |||||||||||||
Sbjct: 3178021 gtccgccagttcc 3178009




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 32      tggtccgccagtt 44
               |||||||||||||
Sbjct: 3294440 tggtccgccagtt 3294452




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 32      tggtccgccagtt 44
               |||||||||||||
Sbjct: 3542825 tggtccgccagtt 3542813




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 16/17 (94%)
 Strand = Plus / Minus

                                
Query: 29      agctggtccgccagttc 45
               ||||| |||||||||||
Sbjct: 3748070 agctgatccgccagttc 3748054




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 72      cgcgcaacatcat 84
               |||||||||||||
Sbjct: 4142319 cgcgcaacatcat 4142331




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 23      acggcaagctggt 35
               |||||||||||||
Sbjct: 4374879 acggcaagctggt 4374867




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 24      cggcaagctggtc 36
               |||||||||||||
Sbjct: 4397726 cggcaagctggtc 4397738




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 34      gtccgccagttcc 46
               |||||||||||||
Sbjct: 4632736 gtccgccagttcc 4632748




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 31      ctggtccgccagt 43
               |||||||||||||
Sbjct: 5039343 ctggtccgccagt 5039355




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 40      cagttccccaccg 52
               |||||||||||||
Sbjct: 5171782 cagttccccaccg 5171794




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 24      cggcaagctggtc 36
               |||||||||||||
Sbjct: 5203315 cggcaagctggtc 5203303




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 24      cggcaagctggtc 36
               |||||||||||||
Sbjct: 5248486 cggcaagctggtc 5248474




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 23      acggcaagctggt 35
               |||||||||||||
Sbjct: 5258174 acggcaagctggt 5258162




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 30      gctggtccgccag 42
               |||||||||||||
Sbjct: 5464699 gctggtccgccag 5464687




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 16/17 (94%)
 Strand = Plus / Minus

                                
Query: 24      cggcaagctggtccgcc 40
               |||| ||||||||||||
Sbjct: 5792850 cggcgagctggtccgcc 5792834




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 16/17 (94%)
 Strand = Plus / Plus

                                
Query: 36      ccgccagttccccaccg 52
               ||||| |||||||||||
Sbjct: 5823741 ccgcctgttccccaccg 5823757




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 22      tacggcaagctgg 34
               |||||||||||||
Sbjct: 5890489 tacggcaagctgg 5890477




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 50      ccgcaggctcggc 62
               |||||||||||||
Sbjct: 5906683 ccgcaggctcggc 5906671




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 51      cgcaggctcggcc 63
               |||||||||||||
Sbjct: 5939611 cgcaggctcggcc 5939599




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 23      acggcaagctggt 35
               |||||||||||||
Sbjct: 6215074 acggcaagctggt 6215062




 Score = 26.3 bits (13), Expect = 5.9
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 24      cggcaagctggtc 36
               |||||||||||||
Sbjct: 6393486 cggcaagctggtc 6393498




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 648
Number of Sequences: 1
Number of extensions: 648
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of query: 88
length of database: 6,534,396
effective HSP length: 15
effective length of query: 73
effective length of database: 6,534,381
effective search space: 477009813
effective search space used: 477009813
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)