BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (332 letters)

Distribution of 77 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           561   e-160 

>GCTS_68 
          Length = 6534396

 Score =  561 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                           
Query: 46      tacgcggtccttgtcggtctttttctgcccggcctcgtcggcgtgggctgcctgcggtgc 105
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4483119 tacgcggtccttgtcggtctttttctgcccggcctcgtcggcgtgggctgcctgcggtgc 4483178

                                                                           
Query: 106     ggcgatggcggtgatggcgacaccgatggcagaagccagcagacgttgcgaagaaacggc 165
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4483179 ggcgatggcggtgatggcgacaccgatggcagaagccagcagacgttgcgaagaaacggc 4483238

                                                                           
Query: 166     ggtatccgtggactgacgcgacattcgaaacccctccccgtgagctgtgaaggtcgcgga 225
               |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4483239 ggtatccgtggactgacgcgacattcgaaacccctccccgggagctgtgaaggtcgcgga 4483298

                                                                           
Query: 226     atttattgcagatcagaattgttatcaattattacggattcgcattcgacaggaatttac 285
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4483299 atttattgcagatcagaattgttatcaattattacggattcgcattcgacaggaatttac 4483358

                                                              
Query: 286     attctttacaattttctcattacattttttcccatctcgctcgtcta 332
               |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4483359 attctttacaattttctcattacattttttcccatctcgctcgtcta 4483405




 Score = 38.2 bits (19), Expect = 0.007
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 106    ggcgatggcggtgatggcg 124
              |||||||||||||||||||
Sbjct: 603985 ggcgatggcggtgatggcg 604003




 Score = 36.2 bits (18), Expect = 0.027
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 109    gatggcggtgatggcgac 126
              ||||||||||||||||||
Sbjct: 997186 gatggcggtgatggcgac 997169




 Score = 34.2 bits (17), Expect = 0.11
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 104     gcggcgatggcggtgat 120
               |||||||||||||||||
Sbjct: 1082676 gcggcgatggcggtgat 1082692




 Score = 34.2 bits (17), Expect = 0.11
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 72      gcccggcctcgtcggcg 88
               |||||||||||||||||
Sbjct: 4680263 gcccggcctcgtcggcg 4680279




 Score = 34.2 bits (17), Expect = 0.11
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 69      tctgcccggcctcgtcg 85
               |||||||||||||||||
Sbjct: 6365305 tctgcccggcctcgtcg 6365321




 Score = 32.2 bits (16), Expect = 0.42
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 118    gatggcgacaccgatg 133
              ||||||||||||||||
Sbjct: 303051 gatggcgacaccgatg 303036




 Score = 32.2 bits (16), Expect = 0.42
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 104    gcggcgatggcggtga 119
              ||||||||||||||||
Sbjct: 679225 gcggcgatggcggtga 679240




 Score = 32.2 bits (16), Expect = 0.42
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 110    atggcggtgatggcga 125
              ||||||||||||||||
Sbjct: 685097 atggcggtgatggcga 685112




 Score = 32.2 bits (16), Expect = 0.42
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 49     gcggtccttgtcggtc 64
              ||||||||||||||||
Sbjct: 936062 gcggtccttgtcggtc 936077




 Score = 32.2 bits (16), Expect = 0.42
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 73      cccggcctcgtcggcg 88
               ||||||||||||||||
Sbjct: 4025833 cccggcctcgtcggcg 4025848




 Score = 32.2 bits (16), Expect = 0.42
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 110     atggcggtgatggcga 125
               ||||||||||||||||
Sbjct: 4316471 atggcggtgatggcga 4316456




 Score = 32.2 bits (16), Expect = 0.42
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 104     gcggcgatggcggtga 119
               ||||||||||||||||
Sbjct: 4489786 gcggcgatggcggtga 4489771




 Score = 32.2 bits (16), Expect = 0.42
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 78      cctcgtcggcgtgggc 93
               ||||||||||||||||
Sbjct: 4924791 cctcgtcggcgtgggc 4924806




 Score = 30.2 bits (15), Expect = 1.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                
Query: 79    ctcgtcggcgtgggctgcc 97
             |||| ||||||||||||||
Sbjct: 82087 ctcggcggcgtgggctgcc 82105




 Score = 30.2 bits (15), Expect = 1.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 106     ggcgatggcggtgatggcg 124
               ||||| |||||||||||||
Sbjct: 1728584 ggcgagggcggtgatggcg 1728602




 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 111     tggcggtgatggcga 125
               |||||||||||||||
Sbjct: 2416117 tggcggtgatggcga 2416103




 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 105     cggcgatggcggtga 119
               |||||||||||||||
Sbjct: 2614535 cggcgatggcggtga 2614521




 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 111     tggcggtgatggcga 125
               |||||||||||||||
Sbjct: 2905084 tggcggtgatggcga 2905070




 Score = 30.2 bits (15), Expect = 1.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 70      ctgcccggcctcgtcggcg 88
               ||||||||||||| |||||
Sbjct: 3814174 ctgcccggcctcggcggcg 3814192




 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 77      gcctcgtcggcgtgg 91
               |||||||||||||||
Sbjct: 3819919 gcctcgtcggcgtgg 3819905




 Score = 30.2 bits (15), Expect = 1.6
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 70      ctgcccggcctcgtcggcg 88
               ||||||||||| |||||||
Sbjct: 3829156 ctgcccggcctggtcggcg 3829138




 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 104     gcggcgatggcggtg 118
               |||||||||||||||
Sbjct: 3898128 gcggcgatggcggtg 3898114




 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 102     gtgcggcgatggcgg 116
               |||||||||||||||
Sbjct: 4107864 gtgcggcgatggcgg 4107850




 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 52      gtccttgtcggtctt 66
               |||||||||||||||
Sbjct: 5337554 gtccttgtcggtctt 5337540




 Score = 30.2 bits (15), Expect = 1.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 106     ggcgatggcggtgatggcg 124
               ||||||||||| |||||||
Sbjct: 5658288 ggcgatggcggcgatggcg 5658306




 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 119     atggcgacaccgatg 133
               |||||||||||||||
Sbjct: 6256871 atggcgacaccgatg 6256857




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 23/26 (88%)
 Strand = Plus / Minus

                                       
Query: 89    tgggctgcctgcggtgcggcgatggc 114
             ||||| |||||| | |||||||||||
Sbjct: 23794 tgggcggcctgctgcgcggcgatggc 23769




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 106    ggcgatggcggtga 119
              ||||||||||||||
Sbjct: 163752 ggcgatggcggtga 163739




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 75     cggcctcgtcggcg 88
              ||||||||||||||
Sbjct: 270474 cggcctcgtcggcg 270461




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 20/22 (90%)
 Strand = Plus / Minus

                                    
Query: 105    cggcgatggcggtgatggcgac 126
              |||||||||||| |||| ||||
Sbjct: 282898 cggcgatggcggagatgccgac 282877




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 81     cgtcggcgtgggct 94
              ||||||||||||||
Sbjct: 403009 cgtcggcgtgggct 403022




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 112    ggcggtgatggcga 125
              ||||||||||||||
Sbjct: 429405 ggcggtgatggcga 429418




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 136    agaagccagcagac 149
              ||||||||||||||
Sbjct: 516598 agaagccagcagac 516585




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 96     cctgcggtgcggcg 109
              ||||||||||||||
Sbjct: 606541 cctgcggtgcggcg 606554




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 75     cggcctcgtcggcg 88
              ||||||||||||||
Sbjct: 683214 cggcctcgtcggcg 683227




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 75     cggcctcgtcggcg 88
              ||||||||||||||
Sbjct: 707506 cggcctcgtcggcg 707493




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 113    gcggtgatggcgac 126
              ||||||||||||||
Sbjct: 752133 gcggtgatggcgac 752120




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 102    gtgcggcgatggcg 115
              ||||||||||||||
Sbjct: 914764 gtgcggcgatggcg 914751




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 69     tctgcccggcctcg 82
              ||||||||||||||
Sbjct: 917993 tctgcccggcctcg 917980




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 113     gcggtgatggcgac 126
               ||||||||||||||
Sbjct: 1162249 gcggtgatggcgac 1162236




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 112     ggcggtgatggcga 125
               ||||||||||||||
Sbjct: 1169270 ggcggtgatggcga 1169257




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 70      ctgcccggcctcgtcggc 87
               ||||||||||||| ||||
Sbjct: 1226426 ctgcccggcctcggcggc 1226443




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 77      gcctcgtcggcgtg 90
               ||||||||||||||
Sbjct: 1336722 gcctcgtcggcgtg 1336735




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 52      gtccttgtcggtct 65
               ||||||||||||||
Sbjct: 1397215 gtccttgtcggtct 1397202




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 111     tggcggtgatggcg 124
               ||||||||||||||
Sbjct: 1435456 tggcggtgatggcg 1435469




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 112     ggcggtgatggcga 125
               ||||||||||||||
Sbjct: 1543413 ggcggtgatggcga 1543426




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 99      gcggtgcggcgatg 112
               ||||||||||||||
Sbjct: 1584764 gcggtgcggcgatg 1584777




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 72      gcccggcctcgtcg 85
               ||||||||||||||
Sbjct: 1722552 gcccggcctcgtcg 1722539




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 106     ggcgatggcggtga 119
               ||||||||||||||
Sbjct: 1817507 ggcgatggcggtga 1817494




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 69      tctgcccggcctcg 82
               ||||||||||||||
Sbjct: 2069196 tctgcccggcctcg 2069209




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 72      gcccggcctcgtcg 85
               ||||||||||||||
Sbjct: 2069691 gcccggcctcgtcg 2069678




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 173     gtggactgacgcga 186
               ||||||||||||||
Sbjct: 2477489 gtggactgacgcga 2477476




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 52      gtccttgtcggtct 65
               ||||||||||||||
Sbjct: 2524873 gtccttgtcggtct 2524886




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 106     ggcgatggcggtga 119
               ||||||||||||||
Sbjct: 2751954 ggcgatggcggtga 2751941




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 75      cggcctcgtcggcg 88
               ||||||||||||||
Sbjct: 2823145 cggcctcgtcggcg 2823158




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 115     ggtgatggcgacac 128
               ||||||||||||||
Sbjct: 2825713 ggtgatggcgacac 2825726




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 75      cggcctcgtcggcg 88
               ||||||||||||||
Sbjct: 2867839 cggcctcgtcggcg 2867852




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 83      tcggcgtgggctgcctgc 100
               ||||| ||||||||||||
Sbjct: 2905277 tcggcctgggctgcctgc 2905294




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 101     ggtgcggcgatggc 114
               ||||||||||||||
Sbjct: 3831655 ggtgcggcgatggc 3831668




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 52      gtccttgtcggtct 65
               ||||||||||||||
Sbjct: 4145844 gtccttgtcggtct 4145831




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 20/22 (90%)
 Strand = Plus / Minus

                                     
Query: 72      gcccggcctcgtcggcgtgggc 93
               ||||||||||| ||||| ||||
Sbjct: 4263851 gcccggcctcgccggcgcgggc 4263830




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 74      ccggcctcgtcggcgtgg 91
               ||||| ||||||||||||
Sbjct: 4339297 ccggcatcgtcggcgtgg 4339280




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 99      gcggtgcggcgatggcgg 116
               |||||||||||| |||||
Sbjct: 4720409 gcggtgcggcgaaggcgg 4720426




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 106     ggcgatggcggtga 119
               ||||||||||||||
Sbjct: 4834122 ggcgatggcggtga 4834109




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 80      tcgtcggcgtgggc 93
               ||||||||||||||
Sbjct: 4872631 tcgtcggcgtgggc 4872618




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 106     ggcgatggcggtga 119
               ||||||||||||||
Sbjct: 5325775 ggcgatggcggtga 5325788




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 95      gcctgcggtgcggcgatg 112
               |||| |||||||||||||
Sbjct: 5360149 gccttcggtgcggcgatg 5360132




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 68      ttctgcccggcctcgtcg 85
               |||| |||||||||||||
Sbjct: 5361238 ttcttcccggcctcgtcg 5361221




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 80      tcgtcggcgtgggc 93
               ||||||||||||||
Sbjct: 5439718 tcgtcggcgtgggc 5439731




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 109     gatggcggtgatgg 122
               ||||||||||||||
Sbjct: 5746458 gatggcggtgatgg 5746445




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 69      tctgcccggcctcg 82
               ||||||||||||||
Sbjct: 5747196 tctgcccggcctcg 5747209




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 68      ttctgcccggcctcgtcg 85
               |||||| |||||||||||
Sbjct: 5944111 ttctgcgcggcctcgtcg 5944094




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 103     tgcggcgatggcgg 116
               ||||||||||||||
Sbjct: 6118420 tgcggcgatggcgg 6118433




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 60      cggtctttttctgcccgg 77
               |||| |||||||||||||
Sbjct: 6237653 cggtttttttctgcccgg 6237670




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 103     tgcggcgatggcgg 116
               ||||||||||||||
Sbjct: 6299909 tgcggcgatggcgg 6299922




 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 104     gcggcgatggcggt 117
               ||||||||||||||
Sbjct: 6423889 gcggcgatggcggt 6423902




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1943
Number of Sequences: 1
Number of extensions: 1943
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of query: 332
length of database: 6,534,396
effective HSP length: 16
effective length of query: 316
effective length of database: 6,534,380
effective search space: 2064864080
effective search space used: 2064864080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)