BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (901 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           850   0.0   

>GCTS_68 
          Length = 6534396

 Score =  850 bits (429), Expect = 0.0
 Identities = 429/429 (100%)
 Strand = Plus / Minus

                                                                          
Query: 65     cgcgaatattccttggactaatttccgacaaaccggaaaaacccatccataggggaagtt 124
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378759 cgcgaatattccttggactaatttccgacaaaccggaaaaacccatccataggggaagtt 378700

                                                                          
Query: 125    aagagcagctcttctgcccttctgctcttctgagcttcagtcggataaggagctggaatg 184
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378699 aagagcagctcttctgcccttctgctcttctgagcttcagtcggataaggagctggaatg 378640

                                                                          
Query: 185    tttatcgaggccgccatagtcatttacgctctggaactcgatatttccagaaacgccggg 244
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378639 tttatcgaggccgccatagtcatttacgctctggaactcgatatttccagaaacgccggg 378580

                                                                          
Query: 245    gggagttcccttgatttcgaatcggcgactcgacttcggcgcgaccatgtcggcatcaac 304
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378579 gggagttcccttgatttcgaatcggcgactcgacttcggcgcgaccatgtcggcatcaac 378520

                                                                          
Query: 305    gacataggaggcattgccagcttttaatttcacgttggcgaaagagacatgaaacgcagt 364
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378519 gacataggaggcattgccagcttttaatttcacgttggcgaaagagacatgaaacgcagt 378460

                                                                          
Query: 365    atcgttggaaacttcgacaaccgacttacctccctgccgaacaagacgccagatcaactt 424
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378459 atcgttggaaacttcgacaaccgacttacctccctgccgaacaagacgccagatcaactt 378400

                                                                          
Query: 425    tccaggcgcttcggcggaagttcccgacaagttatcggggcggtagaagaccttgatacg 484
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378399 tccaggcgcttcggcggaagttcccgacaagttatcggggcggtagaagaccttgatacg 378340

                       
Query: 485    ctggcgcaa 493
              |||||||||
Sbjct: 378339 ctggcgcaa 378331




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 396    ccctgccgaacaagac 411
              ||||||||||||||||
Sbjct: 392576 ccctgccgaacaagac 392591




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 294     tcggcatcaacgacat 309
               ||||||||||||||||
Sbjct: 2893859 tcggcatcaacgacat 2893874




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 277     acttcggcgcgaccat 292
               ||||||||||||||||
Sbjct: 2981037 acttcggcgcgaccat 2981052




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 852    cccacctacgccgac 866
              |||||||||||||||
Sbjct: 675560 cccacctacgccgac 675574




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 271    gactcgacttcggcg 285
              |||||||||||||||
Sbjct: 700434 gactcgacttcggcg 700448




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 278    cttcggcgcgaccat 292
              |||||||||||||||
Sbjct: 946452 cttcggcgcgaccat 946438




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 431     cgcttcggcggaagt 445
               |||||||||||||||
Sbjct: 1026502 cgcttcggcggaagt 1026516




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 436     cggcggaagttcccg 450
               |||||||||||||||
Sbjct: 1068859 cggcggaagttcccg 1068845




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 616     ttctttcttatttac 630
               |||||||||||||||
Sbjct: 2094992 ttctttcttatttac 2095006




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 287     gaccatgtcggcatc 301
               |||||||||||||||
Sbjct: 2857509 gaccatgtcggcatc 2857523




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 422     ctttccaggcgcttc 436
               |||||||||||||||
Sbjct: 3393408 ctttccaggcgcttc 3393422




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 500     ctgcaagccctggcc 514
               |||||||||||||||
Sbjct: 3557224 ctgcaagccctggcc 3557238




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 485     ctggcgcaacatcat 499
               |||||||||||||||
Sbjct: 5403793 ctggcgcaacatcat 5403807




 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 808     gcgagttcctcaccc 822
               |||||||||||||||
Sbjct: 5909821 gcgagttcctcaccc 5909835




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3441
Number of Sequences: 1
Number of extensions: 3441
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 901
length of database: 6,534,396
effective HSP length: 16
effective length of query: 885
effective length of database: 6,534,380
effective search space: 5782926300
effective search space used: 5782926300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)