BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (813 letters)

Distribution of 48 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           553   e-157 



>GCTS_68 
          Length = 6534396

 Score =  553 bits (279), Expect = e-157
 Identities = 298/305 (97%), Gaps = 5/305 (1%)
 Strand = Plus / Plus

                                                                           
Query: 57      tactggggagaagagatcgccaatgcggcgttcgtccattacccggacgaacgctggttc 116
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426461 tactggggagaagagatcgccaatgcggcgttcgtccattacccggacgaacgctggttc 1426520

                                                                           
Query: 117     aagcccggccgcgacgatgcgctgccgctgggactgctcgacggccattgcctggcgatc 176
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426521 aagcccggccgcgacgatgcgctgccgctgggactgctcgacggccattgcctggcgatc 1426580

                                                                           
Query: 177     tacgaccccgacggcgagctgcgcggctcgcacctgtacgacaccaactcgggcaatgtg 236
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426581 tacgaccccgacggcgagctgcgcggctcgcacctgtacgacaccaactcgggcaatgtg 1426640

                                                                           
Query: 237     cagcgcggtatctgcgccttgcccttcgtgcgccagtccgacggccaggnntggtggtnn 296
               |||||||||||||||||||||||||||||||||||||||||||||||     ||||||  
Sbjct: 1426641 cagcgcggtatctgcgccttgcccttcgtgcgccagtccgacggcca-----ggtggtgt 1426695

                                                                           
Query: 297     atttcccctccaacctgatcgagaacctctacctcagcaacggcatgagcgccggtaata 356
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426696 atttcccctccaacctgatcgagaacctctacctcagcaacggcatgagcgccggtaata 1426755

                    
Query: 357     ccctg 361
               |||||
Sbjct: 1426756 ccctg 1426760






 Score = 38.2 bits (19), Expect = 0.017
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 267     cgccagtccgacggccagg 285
               |||||||||||||||||||
Sbjct: 2721205 cgccagtccgacggccagg 2721187






 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 131     cgatgcgctgccgctgg 147
               |||||||||||||||||
Sbjct: 1929993 cgatgcgctgccgctgg 1929977






 Score = 34.2 bits (17), Expect = 0.27
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                    
Query: 143     gctgggactgctcgacggcca 163
               |||||| ||||||||||||||
Sbjct: 2847202 gctgggcctgctcgacggcca 2847182






 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 128     cgacgatgcgctgccgc 144
               |||||||||||||||||
Sbjct: 4729758 cgacgatgcgctgccgc 4729742






 Score = 34.2 bits (17), Expect = 0.27
 Identities = 26/29 (89%)
 Strand = Plus / Plus

                                            
Query: 114     ttcaagcccggccgcgacgatgcgctgcc 142
               ||||||||||||| ||||||  |||||||
Sbjct: 5116101 ttcaagcccggcctcgacgacccgctgcc 5116129






 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 185     cgacggcgagctgcgcg 201
               |||||||||||||||||
Sbjct: 5155843 cgacggcgagctgcgcg 5155827






 Score = 32.2 bits (16), Expect = 1.0
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                  
Query: 124    gccgcgacgatgcgctgccg 143
              |||||| |||||||||||||
Sbjct: 573318 gccgcgtcgatgcgctgccg 573337






 Score = 32.2 bits (16), Expect = 1.0
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 142     cgctgggactgctcgacggc 161
               |||||| |||||||||||||
Sbjct: 1133684 cgctggaactgctcgacggc 1133703






 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 309     acctgatcgagaacct 324
               ||||||||||||||||
Sbjct: 1221241 acctgatcgagaacct 1221256






 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 185     cgacggcgagctgcgc 200
               ||||||||||||||||
Sbjct: 1248622 cgacggcgagctgcgc 1248607






 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 124     gccgcgacgatgcgct 139
               ||||||||||||||||
Sbjct: 1869398 gccgcgacgatgcgct 1869383






 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 338     ggcatgagcgccggta 353
               ||||||||||||||||
Sbjct: 2287578 ggcatgagcgccggta 2287563






 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 179     cgaccccgacggcgag 194
               ||||||||||||||||
Sbjct: 2363624 cgaccccgacggcgag 2363639






 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 131     cgatgcgctgccgctg 146
               ||||||||||||||||
Sbjct: 3096530 cgatgcgctgccgctg 3096545






 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 188     cggcgagctgcgcggc 203
               ||||||||||||||||
Sbjct: 3945658 cggcgagctgcgcggc 3945673






 Score = 32.2 bits (16), Expect = 1.0
 Identities = 28/32 (87%)
 Strand = Plus / Plus

                                               
Query: 166     gcctggcgatctacgaccccgacggcgagctg 197
               |||||||||||| ||||  |||||||| ||||
Sbjct: 4417607 gcctggcgatcttcgacgtcgacggcgtgctg 4417638






 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 243     ggtatctgcgccttgc 258
               ||||||||||||||||
Sbjct: 4806013 ggtatctgcgccttgc 4805998






 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 139     tgccgctgggactgct 154
               ||||||||||||||||
Sbjct: 5036723 tgccgctgggactgct 5036708






 Score = 32.2 bits (16), Expect = 1.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 116     caagcccggccgcgac 131
               ||||||||||||||||
Sbjct: 5391361 caagcccggccgcgac 5391376






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 256    tgcccttcgtgcgcc 270
              |||||||||||||||
Sbjct: 157370 tgcccttcgtgcgcc 157356






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 150    ctgctcgacggccat 164
              |||||||||||||||
Sbjct: 651690 ctgctcgacggccat 651704






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 189    ggcgagctgcgcggc 203
              |||||||||||||||
Sbjct: 857393 ggcgagctgcgcggc 857407






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 124    gccgcgacgatgcgc 138
              |||||||||||||||
Sbjct: 979683 gccgcgacgatgcgc 979669






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 168     ctggcgatctacgac 182
               |||||||||||||||
Sbjct: 1011140 ctggcgatctacgac 1011126






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 158     cggccattgcctggc 172
               |||||||||||||||
Sbjct: 1123082 cggccattgcctggc 1123096






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 125     ccgcgacgatgcgctgccg 143
               |||| ||||||||||||||
Sbjct: 1128018 ccgccacgatgcgctgccg 1128036






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 187     acggcgagctgcgcggctc 205
               |||||| ||||||||||||
Sbjct: 1149754 acggcgtgctgcgcggctc 1149736






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 306     ccaacctgatcgaga 320
               |||||||||||||||
Sbjct: 1587931 ccaacctgatcgaga 1587917






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 118     agcccggccgcgacg 132
               |||||||||||||||
Sbjct: 1813090 agcccggccgcgacg 1813104






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 194     gctgcgcggctcgcacctg 212
               |||||||||||||| ||||
Sbjct: 1819504 gctgcgcggctcgcgcctg 1819522






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 137     gctgccgctgggactgctcgacg 159
               ||||||||||| | |||||||||
Sbjct: 1851079 gctgccgctggaagtgctcgacg 1851057






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 127     gcgacgatgcgctgc 141
               |||||||||||||||
Sbjct: 2073530 gcgacgatgcgctgc 2073544






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 126     cgcgacgatgcgctg 140
               |||||||||||||||
Sbjct: 2850414 cgcgacgatgcgctg 2850400






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 259     ccttcgtgcgccagt 273
               |||||||||||||||
Sbjct: 3086078 ccttcgtgcgccagt 3086064






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 148     gactgctcgacggcc 162
               |||||||||||||||
Sbjct: 3158970 gactgctcgacggcc 3158956






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 137     gctgccgctgggactgctc 155
               ||||||||||| |||||||
Sbjct: 3381655 gctgccgctggcactgctc 3381673






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 185     cgacggcgagctgcgcggc 203
               ||||| |||||||||||||
Sbjct: 4267686 cgacgtcgagctgcgcggc 4267704






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 187     acggcgagctgcgcg 201
               |||||||||||||||
Sbjct: 4966793 acggcgagctgcgcg 4966779






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 133     atgcgctgccgctgg 147
               |||||||||||||||
Sbjct: 5160798 atgcgctgccgctgg 5160784






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 306     ccaacctgatcgaga 320
               |||||||||||||||
Sbjct: 5181073 ccaacctgatcgaga 5181087






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 123     ggccgcgacgatgcgctgc 141
               |||| ||||||||||||||
Sbjct: 5353902 ggcctcgacgatgcgctgc 5353884






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 114     ttcaagcccggccgc 128
               |||||||||||||||
Sbjct: 5460260 ttcaagcccggccgc 5460246






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 198     cgcggctcgcacctg 212
               |||||||||||||||
Sbjct: 5688447 cgcggctcgcacctg 5688461






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 158     cggccattgcctggc 172
               |||||||||||||||
Sbjct: 6286824 cggccattgcctggc 6286810






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 239     gcgcggtatctgcgccttgccct 261
               ||||||| ||| |||||||||||
Sbjct: 6294207 gcgcggtttcttcgccttgccct 6294229






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 250     gcgccttgcccttcg 264
               |||||||||||||||
Sbjct: 6321127 gcgccttgcccttcg 6321141






 Score = 30.2 bits (15), Expect = 4.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 251     cgccttgcccttcgtgcgc 269
               ||||| |||||||||||||
Sbjct: 6342068 cgcctcgcccttcgtgcgc 6342050






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3945
Number of Sequences: 1
Number of extensions: 3945
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of query: 813
length of database: 6,534,396
effective HSP length: 16
effective length of query: 797
effective length of database: 6,534,380
effective search space: 5207900860
effective search space used: 5207900860
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)