BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (947 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           230   3e-60 

>GCTS_68 
          Length = 6534396

 Score =  230 bits (116), Expect = 3e-60
 Identities = 137/144 (95%)
 Strand = Plus / Minus

                                                                           
Query: 149     atattccgatatccgtcttccatgagtcggacaatccgggagaaaggcacaaggccatct 208
               ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5842405 atattccgaaatccgtcttccatgagtcggacaatccgggagtaaggcacaaggccatct 5842346

                                                                           
Query: 209     gggcgcgccgaaaaacctaacacaaacttttgtatttatccgttagatgccacgctttct 268
               |||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||||
Sbjct: 5842345 gggcgcgccgaaaaacctaacacagacttttggattaatccgttagatggcacgctttct 5842286

                                       
Query: 269     caacgaactgcaacaagacccatc 292
               | ||||||||||||||||||||||
Sbjct: 5842285 cgacgaactgcaacaagacccatc 5842262




 Score =  137 bits (69), Expect = 3e-32
 Identities = 69/69 (100%)
 Strand = Plus / Minus

                                                                           
Query: 60      taaaggccaggcgatggagagccacgagttcattccttgaattcagagaggcgcgatact 119
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5842494 taaaggccaggcgatggagagccacgagttcattccttgaattcagagaggcgcgatact 5842435

                        
Query: 120     ggcccagcg 128
               |||||||||
Sbjct: 5842434 ggcccagcg 5842426




 Score = 36.2 bits (18), Expect = 0.078
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 118     ctggcccagcgcatcatc 135
               ||||||||||||||||||
Sbjct: 4625464 ctggcccagcgcatcatc 4625447




 Score = 34.2 bits (17), Expect = 0.31
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 267     ctcaacgaactgcaaca 283
               |||||||||||||||||
Sbjct: 5886371 ctcaacgaactgcaaca 5886355




 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 120     ggcccagcgcatcatc 135
               ||||||||||||||||
Sbjct: 5081229 ggcccagcgcatcatc 5081214




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 696    tgtattaattgtttt 710
              |||||||||||||||
Sbjct: 471378 tgtattaattgtttt 471392




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 117    actggcccagcgcat 131
              |||||||||||||||
Sbjct: 494725 actggcccagcgcat 494711




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 62      aaggccaggcgatgg 76
               |||||||||||||||
Sbjct: 1338060 aaggccaggcgatgg 1338046




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 65      gccaggcgatggagagcca 83
               ||||||||||||| |||||
Sbjct: 1756574 gccaggcgatggatagcca 1756592




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 121     gcccagcgcatcatc 135
               |||||||||||||||
Sbjct: 4031083 gcccagcgcatcatc 4031097




 Score = 30.2 bits (15), Expect = 4.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 118     ctggcccagcgcatc 132
               |||||||||||||||
Sbjct: 6388731 ctggcccagcgcatc 6388717




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2382
Number of Sequences: 1
Number of extensions: 2382
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 947
length of database: 6,534,396
effective HSP length: 16
effective length of query: 931
effective length of database: 6,534,380
effective search space: 6083507780
effective search space used: 6083507780
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)