BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (266 letters)

Distribution of 36 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           163   1e-40 



>GCTS_68 
          Length = 6534396

 Score =  163 bits (82), Expect = 1e-40
 Identities = 109/118 (92%)
 Strand = Plus / Plus

                                                                           
Query: 149     agaaaagtttcctcgccatccggataagggtgtcctcaatgtccatgcgcttgaaattgc 208
               ||||||||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 6046245 agaaaagtttcatcgccatcgggagaaggctgtcctcaatgtccatgcgcttgaaattgc 6046304

                                                                         
Query: 209     ggagaaaaaaacccggggccacgctggagaccctggacgagaagaccggccggaccaa 266
                ||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 6046305 tgagaaaaaaactcggggtcacgctggagaccctggccgagaagaccggcctgaccaa 6046362






 Score = 36.2 bits (18), Expect = 0.021
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                     
Query: 62      gccgacctggctgatggagctc 83
               ||||||||||||||||| ||||
Sbjct: 4026614 gccgacctggctgatggcgctc 4026593






 Score = 34.2 bits (17), Expect = 0.084
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 243    ggacgagaagaccggcc 259
              |||||||||||||||||
Sbjct: 731825 ggacgagaagaccggcc 731841






 Score = 32.2 bits (16), Expect = 0.33
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 230     cgctggagaccctgga 245
               ||||||||||||||||
Sbjct: 5982005 cgctggagaccctgga 5982020






 Score = 30.2 bits (15), Expect = 1.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 225     ggccacgctggagac 239
               |||||||||||||||
Sbjct: 1125389 ggccacgctggagac 1125375






 Score = 30.2 bits (15), Expect = 1.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 244     gacgagaagaccggc 258
               |||||||||||||||
Sbjct: 1445139 gacgagaagaccggc 1445125






 Score = 30.2 bits (15), Expect = 1.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 60      tggccgacctggctg 74
               |||||||||||||||
Sbjct: 1587253 tggccgacctggctg 1587239






 Score = 30.2 bits (15), Expect = 1.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 65      gacctggctgatgga 79
               |||||||||||||||
Sbjct: 1910159 gacctggctgatgga 1910145






 Score = 30.2 bits (15), Expect = 1.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 60      tggccgacctggctg 74
               |||||||||||||||
Sbjct: 2116097 tggccgacctggctg 2116083






 Score = 30.2 bits (15), Expect = 1.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 60      tggccgacctggctg 74
               |||||||||||||||
Sbjct: 2489717 tggccgacctggctg 2489703






 Score = 30.2 bits (15), Expect = 1.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 187     atgtccatgcgcttg 201
               |||||||||||||||
Sbjct: 3649536 atgtccatgcgcttg 3649550






 Score = 30.2 bits (15), Expect = 1.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 61      ggccgacctggctga 75
               |||||||||||||||
Sbjct: 4755523 ggccgacctggctga 4755509






 Score = 30.2 bits (15), Expect = 1.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 60      tggccgacctggctg 74
               |||||||||||||||
Sbjct: 5282700 tggccgacctggctg 5282686






 Score = 30.2 bits (15), Expect = 1.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 221     ccggggccacgctgg 235
               |||||||||||||||
Sbjct: 5341923 ccggggccacgctgg 5341909






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                           
Query: 231   gctggagaccctgg 244
             ||||||||||||||
Sbjct: 19610 gctggagaccctgg 19623






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 63     ccgacctggctgat 76
              ||||||||||||||
Sbjct: 453370 ccgacctggctgat 453383






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 95     gctgccgtaggtga 108
              ||||||||||||||
Sbjct: 732425 gctgccgtaggtga 732412






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 243     ggacgagaagaccg 256
               ||||||||||||||
Sbjct: 1137309 ggacgagaagaccg 1137322






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 68      ctggctgatggagc 81
               ||||||||||||||
Sbjct: 1235552 ctggctgatggagc 1235565






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 121     gatgagcacggaca 134
               ||||||||||||||
Sbjct: 1390765 gatgagcacggaca 1390752






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 232     ctggagaccctgga 245
               ||||||||||||||
Sbjct: 1736315 ctggagaccctgga 1736328






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 230     cgctggagaccctg 243
               ||||||||||||||
Sbjct: 2635480 cgctggagaccctg 2635467






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 230     cgctggagaccctg 243
               ||||||||||||||
Sbjct: 3495327 cgctggagaccctg 3495340






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 236     agaccctggacgag 249
               ||||||||||||||
Sbjct: 3698093 agaccctggacgag 3698080






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 232     ctggagaccctggacgag 249
               ||||||||||||| ||||
Sbjct: 3795883 ctggagaccctggtcgag 3795900






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 228     cacgctggagaccc 241
               ||||||||||||||
Sbjct: 3874351 cacgctggagaccc 3874338






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 165     catccggataaggg 178
               ||||||||||||||
Sbjct: 4028542 catccggataaggg 4028529






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 58      ggtggccgacctgg 71
               ||||||||||||||
Sbjct: 4075702 ggtggccgacctgg 4075689






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 59      gtggccgacctggc 72
               ||||||||||||||
Sbjct: 4298442 gtggccgacctggc 4298429






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 224     gggccacgctggag 237
               ||||||||||||||
Sbjct: 4354535 gggccacgctggag 4354522






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 65      gacctggctgatgg 78
               ||||||||||||||
Sbjct: 4680105 gacctggctgatgg 4680118






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 92      gacgctgccgtagg 105
               ||||||||||||||
Sbjct: 4942820 gacgctgccgtagg 4942833






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 230     cgctggagaccctg 243
               ||||||||||||||
Sbjct: 5298916 cgctggagaccctg 5298903






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 239     ccctggacgagaag 252
               ||||||||||||||
Sbjct: 5573571 ccctggacgagaag 5573558






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 58      ggtggccgacctgg 71
               ||||||||||||||
Sbjct: 5663500 ggtggccgacctgg 5663487






 Score = 28.2 bits (14), Expect = 5.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 59      gtggccgacctggc 72
               ||||||||||||||
Sbjct: 5859504 gtggccgacctggc 5859491






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1642
Number of Sequences: 1
Number of extensions: 1642
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of query: 266
length of database: 6,534,396
effective HSP length: 15
effective length of query: 251
effective length of database: 6,534,381
effective search space: 1640129631
effective search space used: 1640129631
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)