BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (369 letters)

Distribution of 55 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           678   0.0   



>GCTS_68 
          Length = 6534396

 Score =  678 bits (342), Expect = 0.0
 Identities = 345/346 (99%)
 Strand = Plus / Plus

                                                                           
Query: 24      tactacccgtccagtgccaatcgcctgtacgtggcgatgggcgagcctcggcagttccag 83
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5973540 tactacccgtccagtgccaatcgcctgtacgtggcgatgggcgagcctcggcagttccag 5973599

                                                                           
Query: 84      ctgtcgacgacggtggagttctgagtcggcgctcgttccaggtggggttccccggcgtcc 143
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5973600 ctgtcgacgacggtggagttctgagtcggcgctcgttccaggtggggttccccggcgtcc 5973659

                                                                           
Query: 144     tcctggacgtggaggccccccctgaagggcgaagggtcggcgcgatgctgcccgaccatg 203
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5973660 tcctggacgtggaggccccccctgaagggcgaagggtcggcgcgatgctgcccgaccatg 5973719

                                                                           
Query: 204     ctccatccggttccttcttcccccagggaagggattgcccggcacgtgagtcgttccgct 263
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5973720 ctccatccggttccttcttcccccagggaagggattgcccggcacgtgagtcgttccgct 5973779

                                                                           
Query: 264     atccagtgccttctcccattggggaaaggaaggcggagtaccgcctggcacgacctcgcc 323
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5973780 atccagtgccttctcccattggggaaaggaaggcggagtaccgcctggcacgacctcgcc 5973839

                                                             
Query: 324     gcacgccacacctcgttcccaacccgcccgttgggtaccatacccg 369
               ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5973840 gcacgccacacctcgttcccaacccgcccgttgggtaccatgcccg 5973885






 Score = 32.2 bits (16), Expect = 0.46
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 202     tgctccatccggttcc 217
               ||||||||||||||||
Sbjct: 1096488 tgctccatccggttcc 1096473






 Score = 32.2 bits (16), Expect = 0.46
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 111     ggcgctcgttccaggt 126
               ||||||||||||||||
Sbjct: 2419745 ggcgctcgttccaggt 2419730






 Score = 32.2 bits (16), Expect = 0.46
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 317     cctcgccgcacgccac 332
               ||||||||||||||||
Sbjct: 2638102 cctcgccgcacgccac 2638117






 Score = 32.2 bits (16), Expect = 0.46
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 191     ctgcccgaccatgctc 206
               ||||||||||||||||
Sbjct: 2935665 ctgcccgaccatgctc 2935650






 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 284    ggggaaaggaaggcg 298
              |||||||||||||||
Sbjct: 262605 ggggaaaggaaggcg 262619






 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 189    tgctgcccgaccatg 203
              |||||||||||||||
Sbjct: 660724 tgctgcccgaccatg 660710






 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 235     ggattgcccggcacg 249
               |||||||||||||||
Sbjct: 1165234 ggattgcccggcacg 1165248






 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 85      tgtcgacgacggtgg 99
               |||||||||||||||
Sbjct: 1461010 tgtcgacgacggtgg 1461024






 Score = 30.2 bits (15), Expect = 1.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 136     cggcgtcctcctggacgtg 154
               |||||| ||||||||||||
Sbjct: 2797100 cggcgtactcctggacgtg 2797118






 Score = 30.2 bits (15), Expect = 1.8
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 80      ccagctgtcgacgacggtggagt 102
               |||||||||||||| ||| ||||
Sbjct: 3366634 ccagctgtcgacgatggtcgagt 3366612






 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 327     cgccacacctcgttc 341
               |||||||||||||||
Sbjct: 3538979 cgccacacctcgttc 3538965






 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 55      tggcgatgggcgagc 69
               |||||||||||||||
Sbjct: 3613296 tggcgatgggcgagc 3613282






 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 181     cggcgcgatgctgcc 195
               |||||||||||||||
Sbjct: 4106603 cggcgcgatgctgcc 4106617






 Score = 30.2 bits (15), Expect = 1.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 136     cggcgtcctcctgga 150
               |||||||||||||||
Sbjct: 4493091 cggcgtcctcctgga 4493105






 Score = 30.2 bits (15), Expect = 1.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 136     cggcgtcctcctggacgtg 154
               |||||||||||| ||||||
Sbjct: 5916941 cggcgtcctcctcgacgtg 5916959






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                           
Query: 144   tcctggacgtggag 157
             ||||||||||||||
Sbjct: 64670 tcctggacgtggag 64657






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 264    atccagtgccttct 277
              ||||||||||||||
Sbjct: 356384 atccagtgccttct 356371






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 183    gcgcgatgctgccc 196
              ||||||||||||||
Sbjct: 469806 gcgcgatgctgccc 469793






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 147    tggacgtggaggcc 160
              ||||||||||||||
Sbjct: 495752 tggacgtggaggcc 495765






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                
Query: 181    cggcgcgatgctgcccga 198
              ||||| ||||||||||||
Sbjct: 522864 cggcgagatgctgcccga 522881






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 177    gggtcggcgcgatg 190
              ||||||||||||||
Sbjct: 710229 gggtcggcgcgatg 710216






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 71      tcggcagttccagc 84
               ||||||||||||||
Sbjct: 1092188 tcggcagttccagc 1092175






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 136     cggcgtcctcctgg 149
               ||||||||||||||
Sbjct: 1104527 cggcgtcctcctgg 1104514






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 311     gcacgacctcgccg 324
               ||||||||||||||
Sbjct: 1489354 gcacgacctcgccg 1489367






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 198     accatgctccatcc 211
               ||||||||||||||
Sbjct: 1570578 accatgctccatcc 1570591






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 122     caggtggggttccccggc 139
               |||||| |||||||||||
Sbjct: 1581337 caggtgtggttccccggc 1581354






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 191     ctgcccgaccatgc 204
               ||||||||||||||
Sbjct: 1656810 ctgcccgaccatgc 1656797






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 76      agttccagctgtcg 89
               ||||||||||||||
Sbjct: 1940598 agttccagctgtcg 1940611






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 67      agcctcggcagttccagc 84
               |||| |||||||||||||
Sbjct: 2091335 agccacggcagttccagc 2091352






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 311     gcacgacctcgccg 324
               ||||||||||||||
Sbjct: 2539295 gcacgacctcgccg 2539308






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 195     ccgaccatgctcca 208
               ||||||||||||||
Sbjct: 2880462 ccgaccatgctcca 2880475






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 181     cggcgcgatgctgc 194
               ||||||||||||||
Sbjct: 3110737 cggcgcgatgctgc 3110724






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 316     acctcgccgcacgc 329
               ||||||||||||||
Sbjct: 3364624 acctcgccgcacgc 3364637






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 265     tccagtgccttctc 278
               ||||||||||||||
Sbjct: 3487620 tccagtgccttctc 3487633






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 73      ggcagttccagctg 86
               ||||||||||||||
Sbjct: 3731596 ggcagttccagctg 3731609






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 55      tggcgatgggcgag 68
               ||||||||||||||
Sbjct: 4006657 tggcgatgggcgag 4006644






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 171     ggcgaagggtcggc 184
               ||||||||||||||
Sbjct: 4017524 ggcgaagggtcggc 4017511






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 194     cccgaccatgctccatcc 211
               ||||||||||||| ||||
Sbjct: 4041420 cccgaccatgctcgatcc 4041437






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 72      cggcagttccagct 85
               ||||||||||||||
Sbjct: 4338246 cggcagttccagct 4338233






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 199     ccatgctccatccg 212
               ||||||||||||||
Sbjct: 4467663 ccatgctccatccg 4467676






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 166     tgaagggcgaaggg 179
               ||||||||||||||
Sbjct: 4610812 tgaagggcgaaggg 4610825






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 55      tggcgatgggcgag 68
               ||||||||||||||
Sbjct: 5038349 tggcgatgggcgag 5038362






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 307     cctggcacgacctcgccg 324
               ||||||||||||| ||||
Sbjct: 5161826 cctggcacgacctggccg 5161809






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 313     acgacctcgccgca 326
               ||||||||||||||
Sbjct: 5244384 acgacctcgccgca 5244397






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 72      cggcagttccagct 85
               ||||||||||||||
Sbjct: 5292678 cggcagttccagct 5292691






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 37      gtgccaatcgcctg 50
               ||||||||||||||
Sbjct: 5515782 gtgccaatcgcctg 5515795






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 218     ttcttcccccaggg 231
               ||||||||||||||
Sbjct: 5760251 ttcttcccccaggg 5760264






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 117     cgttccaggtgggg 130
               ||||||||||||||
Sbjct: 5763687 cgttccaggtgggg 5763674






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 39      gccaatcgcctgtacgtg 56
               ||||| ||||||||||||
Sbjct: 6115877 gccaaccgcctgtacgtg 6115894






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 92      gacggtggagttct 105
               ||||||||||||||
Sbjct: 6116807 gacggtggagttct 6116794






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 207     catccggttccttc 220
               ||||||||||||||
Sbjct: 6213464 catccggttccttc 6213451






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 295     ggcggagtaccgcc 308
               ||||||||||||||
Sbjct: 6273197 ggcggagtaccgcc 6273210






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 308     ctggcacgacctcg 321
               ||||||||||||||
Sbjct: 6343436 ctggcacgacctcg 6343449






 Score = 28.2 bits (14), Expect = 7.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 299     gagtaccgcctggc 312
               ||||||||||||||
Sbjct: 6467405 gagtaccgcctggc 6467392






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2284
Number of Sequences: 1
Number of extensions: 2284
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of query: 369
length of database: 6,534,396
effective HSP length: 16
effective length of query: 353
effective length of database: 6,534,380
effective search space: 2306636140
effective search space used: 2306636140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)