BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (243 letters)

Distribution of 17 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           123   1e-28 
>GCTS_68 
          Length = 6534396

 Score =  123 bits (62), Expect = 1e-28
 Identities = 67/69 (97%)
 Strand = Plus / Plus

                                                                           
Query: 50      tatttcccctccaacctgatcgangacctctacctcagcaacggcatgagcgccggtaat 109
               |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 1426695 tatttcccctccaacctgatcgagaacctctacctcagcaacggcatgagcgccggtaat 1426754

                        
Query: 110     accctggcc 118
               |||||||||
Sbjct: 1426755 accctggcc 1426763

 Score = 32.2 bits (16), Expect = 0.30
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 215    taatctcccttctttttttt 234
              ||||||||||||||| ||||
Sbjct: 200156 taatctcccttctttctttt 200137

 Score = 32.2 bits (16), Expect = 0.30
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 92      ggcatgagcgccggta 107
               ||||||||||||||||
Sbjct: 2287578 ggcatgagcgccggta 2287563

 Score = 30.2 bits (15), Expect = 1.2
 Identities = 26/30 (86%)
 Strand = Plus / Minus

                                             
Query: 61      caacctgatcgangacctctacctcagcaa 90
               |||||||||||| | || | ||||||||||
Sbjct: 3198199 caacctgatcgaggtccgcgacctcagcaa 3198170

 Score = 30.2 bits (15), Expect = 1.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 74      gacctctacctcagc 88
               |||||||||||||||
Sbjct: 5040066 gacctctacctcagc 5040080

 Score = 28.2 bits (14), Expect = 4.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                           
Query: 57    cctccaacctgatc 70
             ||||||||||||||
Sbjct: 30004 cctccaacctgatc 30017

 Score = 28.2 bits (14), Expect = 4.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 84      tcagcaacggcatg 97
               ||||||||||||||
Sbjct: 4106634 tcagcaacggcatg 4106621

 Score = 28.2 bits (14), Expect = 4.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 87      gcaacggcatgagc 100
               ||||||||||||||
Sbjct: 4226365 gcaacggcatgagc 4226378

 Score = 28.2 bits (14), Expect = 4.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 91      cggcatgagcgccg 104
               ||||||||||||||
Sbjct: 4445125 cggcatgagcgccg 4445138

 Score = 28.2 bits (14), Expect = 4.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 90      acggcatgagcgcc 103
               ||||||||||||||
Sbjct: 4714320 acggcatgagcgcc 4714307

 Score = 28.2 bits (14), Expect = 4.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 52      tttcccctccaacc 65
               ||||||||||||||
Sbjct: 4830078 tttcccctccaacc 4830065

 Score = 28.2 bits (14), Expect = 4.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 107     aataccctggccaa 120
               ||||||||||||||
Sbjct: 5613281 aataccctggccaa 5613294

 Score = 28.2 bits (14), Expect = 4.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 220     tcccttcttttttt 233
               ||||||||||||||
Sbjct: 5647538 tcccttcttttttt 5647551

 Score = 28.2 bits (14), Expect = 4.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 90      acggcatgagcgcc 103
               ||||||||||||||
Sbjct: 5720874 acggcatgagcgcc 5720861

 Score = 28.2 bits (14), Expect = 4.7
 Identities = 22/25 (88%)
 Strand = Plus / Plus

                                        
Query: 60      ccaacctgatcgangacctctacct 84
               ||||||||||| | |||||| ||||
Sbjct: 6059300 ccaacctgatccatgacctcgacct 6059324

 Score = 28.2 bits (14), Expect = 4.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 88      caacggcatgagcg 101
               ||||||||||||||
Sbjct: 6291434 caacggcatgagcg 6291447

 Score = 28.2 bits (14), Expect = 4.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 87      gcaacggcatgagc 100
               ||||||||||||||
Sbjct: 6467605 gcaacggcatgagc 6467592
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 764
Number of Sequences: 1
Number of extensions: 764
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 243
length of database: 6,534,396
effective HSP length: 15
effective length of query: 228
effective length of database: 6,534,381
effective search space: 1489838868
effective search space used: 1489838868
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)