BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (154 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                            88   4e-18 

>GCTS_68 
          Length = 6534396

 Score = 87.7 bits (44), Expect = 4e-18
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                       
Query: 94      gccgaccgcggctacctggtctccctgttccaggatgcctgtgccacccatacccc 149
               ||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 5736336 gccgaccgcggctacctggtcaccctggtcgaggatgcctgtgccacccatacccc 5736391




 Score = 69.9 bits (35), Expect = 8e-13
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                 
Query: 6       tatccatgtcgccagaggtgaanagtacgtccttggcccggaatacctct 55
               |||||||||||||  |||||||  ||||||||||||||||||||||||||
Sbjct: 5867085 tatccatgtcgccgaaggtgaaaggtacgtccttggcccggaatacctct 5867036




 Score = 30.2 bits (15), Expect = 0.72
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 60     cccatcatctgcagg 74
              |||||||||||||||
Sbjct: 988623 cccatcatctgcagg 988609




 Score = 30.2 bits (15), Expect = 0.72
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 102     cggctacctggtctc 116
               |||||||||||||||
Sbjct: 1633810 cggctacctggtctc 1633796




 Score = 30.2 bits (15), Expect = 0.72
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 46      gaatacctctccccc 60
               |||||||||||||||
Sbjct: 1775371 gaatacctctccccc 1775357




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 96     cgaccgcggctacc 109
              ||||||||||||||
Sbjct: 103958 cgaccgcggctacc 103971




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 96      cgaccgcggctacc 109
               ||||||||||||||
Sbjct: 1227307 cgaccgcggctacc 1227320




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 99      ccgcggctacctgg 112
               ||||||||||||||
Sbjct: 1317605 ccgcggctacctgg 1317618




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 119     tgttccaggatgcc 132
               ||||||||||||||
Sbjct: 1342206 tgttccaggatgcc 1342193




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 70      gcaggcctggccag 83
               ||||||||||||||
Sbjct: 2122097 gcaggcctggccag 2122110




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 113     tctccctgttccag 126
               ||||||||||||||
Sbjct: 2136661 tctccctgttccag 2136674




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 122     tccaggatgcctgt 135
               ||||||||||||||
Sbjct: 3190943 tccaggatgcctgt 3190956




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 98      accgcggctacctg 111
               ||||||||||||||
Sbjct: 3822242 accgcggctacctg 3822229




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 109     ctggtctccctgttccag 126
               |||||| |||||||||||
Sbjct: 4138825 ctggtcgccctgttccag 4138842




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 70      gcaggcctggccag 83
               ||||||||||||||
Sbjct: 4545339 gcaggcctggccag 4545326




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 98      accgcggctacctg 111
               ||||||||||||||
Sbjct: 4670472 accgcggctacctg 4670485




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 97      gaccgcggctacctggtc 114
               ||||||||||||| ||||
Sbjct: 5812329 gaccgcggctaccaggtc 5812346




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 135     tgccacccataccc 148
               ||||||||||||||
Sbjct: 6163984 tgccacccataccc 6163971




 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 110     tggtctccctgttc 123
               ||||||||||||||
Sbjct: 6434674 tggtctccctgttc 6434687




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 869
Number of Sequences: 1
Number of extensions: 869
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 154
length of database: 6,534,396
effective HSP length: 15
effective length of query: 139
effective length of database: 6,534,381
effective search space: 908278959
effective search space used: 908278959
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)