BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (841 letters)

Distribution of 60 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           611   e-175 
>GCTS_68 
          Length = 6534396

 Score =  611 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Minus

                                                                          
Query: 59     tatcacccttgccctcggtgattgcggcctcgaccgcgctggtgtcgatcaccccggcga 118
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602971 tatcacccttgccctcggtgattgcggcctcgaccgcgctggtgtcgatcaccccggcga 602912

                                                                          
Query: 119    aggccggcagcgaagtcgcggcagtgacggaaccggcgatgcacaggttgcggaacgagg 178
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602911 aggccggcagcgaagtcgcggcagtgacggaaccggcgatgcacaggttgcggaacgagg 602852

                                                                          
Query: 179    cgaccgggctgaacttggcgatgcgttgcttcattgctttcatggtgtttcctctctatt 238
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602851 cgaccgggctgaacttggcgatgcgttgcttcattgctttcatggtgtttcctctctatt 602792

                                                                          
Query: 239    tggctttacgaagaagtgacgcgacccagccaatcaaaagccccgtcacgaacgatccca 298
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602791 tggctttacgaagaagtgacgcgacccagccaatcaaaagccccgtcacgaacgatccca 602732

                                                                          
Query: 299    ggacgccagcggcaccgatgccgaaggcttccggggagaaaccaccgttgaccaggatgt 358
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602731 ggacgccagcggcaccgatgccgaaggcttccggggagaaaccaccgttgaccaggatgt 602672

                      
Query: 359    ccacgtat 366
              ||||||||
Sbjct: 602671 ccacgtat 602664

 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 213    tgctttcatggtgtttc 229
              |||||||||||||||||
Sbjct: 581909 tgctttcatggtgtttc 581893

 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 308     cggcaccgatgccgaag 324
               |||||||||||||||||
Sbjct: 2041196 cggcaccgatgccgaag 2041212

 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 345     gttgaccaggatgtcca 361
               |||||||||||||||||
Sbjct: 2159459 gttgaccaggatgtcca 2159475

 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 99      ggtgtcgatcaccccgg 115
               |||||||||||||||||
Sbjct: 3219267 ggtgtcgatcaccccgg 3219283

 Score = 34.2 bits (17), Expect = 0.27
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 377     cccatcatctgcagggcctgg 397
               |||| ||||||||||||||||
Sbjct: 4292713 cccaccatctgcagggcctgg 4292733

 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 305     cagcggcaccgatgccg 321
               |||||||||||||||||
Sbjct: 5749781 cagcggcaccgatgccg 5749765

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 114    ggcgaaggccggcagc 129
              ||||||||||||||||
Sbjct: 405125 ggcgaaggccggcagc 405110

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 345    gttgaccaggatgtcc 360
              ||||||||||||||||
Sbjct: 777254 gttgaccaggatgtcc 777239

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 296     ccaggacgccagcggc 311
               ||||||||||||||||
Sbjct: 1457150 ccaggacgccagcggc 1457135

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 82      gcggcctcgaccgcgc 97
               ||||||||||||||||
Sbjct: 1643838 gcggcctcgaccgcgc 1643823

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 386     tgcagggcctggccaa 401
               ||||||||||||||||
Sbjct: 1688379 tgcagggcctggccaa 1688364

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 64      cccttgccctcggtga 79
               ||||||||||||||||
Sbjct: 2133310 cccttgccctcggtga 2133325

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 104     cgatcaccccggcgaa 119
               ||||||||||||||||
Sbjct: 2344524 cgatcaccccggcgaa 2344509

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 370     gcgcccccccatcatctgca 389
               |||||| |||||||||||||
Sbjct: 3285621 gcgcccgcccatcatctgca 3285602

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 311     caccgatgccgaaggc 326
               ||||||||||||||||
Sbjct: 4053616 caccgatgccgaaggc 4053601

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                       
Query: 94      gcgctggtgtcgatcaccccggcg 117
               ||||||| ||||||||||| ||||
Sbjct: 4738051 gcgctggagtcgatcacccaggcg 4738074

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 65      ccttgccctcggtgat 80
               ||||||||||||||||
Sbjct: 5361534 ccttgccctcggtgat 5361519

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 97      ctggtgtcgatcaccccggc 116
               |||||| |||||||||||||
Sbjct: 5488426 ctggtggcgatcaccccggc 5488407

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 102     gtcgatcaccccggcg 117
               ||||||||||||||||
Sbjct: 5668266 gtcgatcaccccggcg 5668251

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                            
Query: 112   ccggcgaaggccggc 126
             |||||||||||||||
Sbjct: 53313 ccggcgaaggccggc 53327

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                            
Query: 343   ccgttgaccaggatg 357
             |||||||||||||||
Sbjct: 94694 ccgttgaccaggatg 94708

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 311    caccgatgccgaagg 325
              |||||||||||||||
Sbjct: 364479 caccgatgccgaagg 364465

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 383    atctgcagggcctgg 397
              |||||||||||||||
Sbjct: 783131 atctgcagggcctgg 783117

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 385    ctgcagggcctggcc 399
              |||||||||||||||
Sbjct: 910274 ctgcagggcctggcc 910288

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 377    cccatcatctgcagg 391
              |||||||||||||||
Sbjct: 988623 cccatcatctgcagg 988609

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 345     gttgaccaggatgtc 359
               |||||||||||||||
Sbjct: 1306707 gttgaccaggatgtc 1306721

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 110     ccccggcgaaggccg 124
               |||||||||||||||
Sbjct: 1611562 ccccggcgaaggccg 1611576

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 117     gaaggccggcagcga 131
               |||||||||||||||
Sbjct: 1790930 gaaggccggcagcga 1790916

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 297     caggacgccagcggc 311
               |||||||||||||||
Sbjct: 2008760 caggacgccagcggc 2008774

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 383     atctgcagggcctgg 397
               |||||||||||||||
Sbjct: 2050939 atctgcagggcctgg 2050925

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 298     aggacgccagcggca 312
               |||||||||||||||
Sbjct: 2081200 aggacgccagcggca 2081214

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 103     tcgatcaccccggcg 117
               |||||||||||||||
Sbjct: 2104299 tcgatcaccccggcg 2104313

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 167     tgcggaacgaggcgaccgg 185
               |||||||||||||| ||||
Sbjct: 2361821 tgcggaacgaggcggccgg 2361803

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 197     cgatgcgttgcttca 211
               |||||||||||||||
Sbjct: 2466830 cgatgcgttgcttca 2466844

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 308     cggcaccgatgccga 322
               |||||||||||||||
Sbjct: 2605943 cggcaccgatgccga 2605929

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 91      accgcgctggtgtcgatca 109
               ||||||||||| |||||||
Sbjct: 2664544 accgcgctggtctcgatca 2664562

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 82      gcggcctcgaccgcg 96
               |||||||||||||||
Sbjct: 2881712 gcggcctcgaccgcg 2881698

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 298     aggacgccagcggca 312
               |||||||||||||||
Sbjct: 3189909 aggacgccagcggca 3189895

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 307     gcggcaccgatgccg 321
               |||||||||||||||
Sbjct: 3587706 gcggcaccgatgccg 3587692

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 104     cgatcaccccggcga 118
               |||||||||||||||
Sbjct: 3840793 cgatcaccccggcga 3840807

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 302     cgccagcggcaccga 316
               |||||||||||||||
Sbjct: 3893149 cgccagcggcaccga 3893135

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 300     gacgccagcggcacc 314
               |||||||||||||||
Sbjct: 4012734 gacgccagcggcacc 4012748

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 104     cgatcaccccggcga 118
               |||||||||||||||
Sbjct: 4275447 cgatcaccccggcga 4275433

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 189     gaacttggcgatgcg 203
               |||||||||||||||
Sbjct: 4284312 gaacttggcgatgcg 4284298

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 311     caccgatgccgaagg 325
               |||||||||||||||
Sbjct: 4621395 caccgatgccgaagg 4621409

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 143     tgacggaaccggcga 157
               |||||||||||||||
Sbjct: 4638335 tgacggaaccggcga 4638349

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 297     caggacgccagcggc 311
               |||||||||||||||
Sbjct: 5078489 caggacgccagcggc 5078503

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 384     tctgcagggcctggc 398
               |||||||||||||||
Sbjct: 5099006 tctgcagggcctggc 5098992

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 790     ttttttttgtttttt 804
               |||||||||||||||
Sbjct: 5334362 ttttttttgtttttt 5334348

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 727     ttttttttgtttttt 741
               |||||||||||||||
Sbjct: 5334362 ttttttttgtttttt 5334348

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 708     ttttttttgtttttt 722
               |||||||||||||||
Sbjct: 5334362 ttttttttgtttttt 5334348

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 91      accgcgctggtgtcg 105
               |||||||||||||||
Sbjct: 5338486 accgcgctggtgtcg 5338500

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 110     ccccggcgaaggccggcag 128
               |||||||||||||| ||||
Sbjct: 5634977 ccccggcgaaggcctgcag 5634995

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 103     tcgatcaccccggcg 117
               |||||||||||||||
Sbjct: 5845328 tcgatcaccccggcg 5845314

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 91      accgcgctggtgtcg 105
               |||||||||||||||
Sbjct: 5871926 accgcgctggtgtcg 5871912

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 104     cgatcaccccggcga 118
               |||||||||||||||
Sbjct: 5946539 cgatcaccccggcga 5946553

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 345     gttgaccaggatgtc 359
               |||||||||||||||
Sbjct: 6007552 gttgaccaggatgtc 6007538

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 294     tcccaggacgccagcggca 312
               ||||||| |||||||||||
Sbjct: 6198197 tcccaggccgccagcggca 6198215

 Score = 30.2 bits (15), Expect = 4.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 151     ccggcgatgcacagg 165
               |||||||||||||||
Sbjct: 6327877 ccggcgatgcacagg 6327891
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4280
Number of Sequences: 1
Number of extensions: 4280
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of query: 841
length of database: 6,534,396
effective HSP length: 16
effective length of query: 825
effective length of database: 6,534,380
effective search space: 5390863500
effective search space used: 5390863500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)