BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (871 letters)

Distribution of 57 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           844   0.0   
>GCTS_68 
          Length = 6534396

 Score =  844 bits (426), Expect = 0.0
 Identities = 426/426 (100%)
 Strand = Plus / Minus

                                                                          
Query: 59     tacgtgcgctggccgaaggaaccggcggttctgcaactctgcgtggtcggcccgaccgag 118
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518878 tacgtgcgctggccgaaggaaccggcggttctgcaactctgcgtggtcggcccgaccgag 518819

                                                                          
Query: 119    tacgccgacggtctgctccgcggcatggtgcaggccaatggcaggcgcgtgcatgcggaa 178
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518818 tacgccgacggtctgctccgcggcatggtgcaggccaatggcaggcgcgtgcatgcggaa 518759

                                                                          
Query: 179    cgccgcgcggtggacaacccggacctcggcacgctctgcaacgtgatctacctcggagtg 238
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518758 cgccgcgcggtggacaacccggacctcggcacgctctgcaacgtgatctacctcggagtg 518699

                                                                          
Query: 239    gtcgacgagcgcgagcgccagcaggtgttccacagcctggccgggcatccggtcctgtcc 298
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518698 gtcgacgagcgcgagcgccagcaggtgttccacagcctggccgggcatccggtcctgtcc 518639

                                                                          
Query: 299    atcagcgagcgtggcaccgaatgcagcgtcggcagcatgttctgcctcaacgtcggcggt 358
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518638 atcagcgagcgtggcaccgaatgcagcgtcggcagcatgttctgcctcaacgtcggcggt 518579

                                                                          
Query: 359    ccgcgcatcaccttcgaggccaatctcgactccatcgcccgcagcggcgtacgcgtgcac 418
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518578 ccgcgcatcaccttcgaggccaatctcgactccatcgcccgcagcggcgtacgcgtgcac 518519

                                                                          
Query: 419    ccgagcgtattgaaactggcaaggcggcaggccactccgtgatgaaccgtcgtcgtcgct 478
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518518 ccgagcgtattgaaactggcaaggcggcaggccactccgtgatgaaccgtcgtcgtcgct 518459

                    
Query: 479    atacgg 484
              ||||||
Sbjct: 518458 atacgg 518453

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 237     tggtcgacgagcgcgagcgccagcag 262
               |||||||||| |||||||||||||||
Sbjct: 2811772 tggtcgacgaccgcgagcgccagcag 2811747

 Score = 36.2 bits (18), Expect = 0.072
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 271     cagcctggccgggcatcc 288
               ||||||||||||||||||
Sbjct: 1476842 cagcctggccgggcatcc 1476825

 Score = 34.2 bits (17), Expect = 0.28
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 270     acagcctggccgggcatccgg 290
               ||||||||||||||| |||||
Sbjct: 1564459 acagcctggccgggcttccgg 1564479

 Score = 34.2 bits (17), Expect = 0.28
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                    
Query: 243     acgagcgcgagcgccagcagg 263
               ||||||||||||||| |||||
Sbjct: 2126618 acgagcgcgagcgcccgcagg 2126598

 Score = 34.2 bits (17), Expect = 0.28
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 63      tgcgctggccgaaggaaccgg 83
               ||||||||| |||||||||||
Sbjct: 4309340 tgcgctggctgaaggaaccgg 4309360

 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 362     cgcatcaccttcgaggc 378
               |||||||||||||||||
Sbjct: 4822873 cgcatcaccttcgaggc 4822889

 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 355     cggtccgcgcatcacct 371
               |||||||||||||||||
Sbjct: 5604058 cggtccgcgcatcacct 5604074

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 271     cagcctggccgggcat 286
               ||||||||||||||||
Sbjct: 1349269 cagcctggccgggcat 1349284

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 64      gcgctggccgaaggaa 79
               ||||||||||||||||
Sbjct: 2175250 gcgctggccgaaggaa 2175265

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 393     tcgcccgcagcggcgt 408
               ||||||||||||||||
Sbjct: 2455576 tcgcccgcagcggcgt 2455591

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 273     gcctggccgggcatcc 288
               ||||||||||||||||
Sbjct: 2511410 gcctggccgggcatcc 2511395

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 240     tcgacgagcgcgagcgccag 259
               |||||||||||| |||||||
Sbjct: 2596715 tcgacgagcgcgtgcgccag 2596734

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 182     cgcgcggtggacaacc 197
               ||||||||||||||||
Sbjct: 2976940 cgcgcggtggacaacc 2976955

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 173     gcggaacgccgcgcgg 188
               ||||||||||||||||
Sbjct: 3276855 gcggaacgccgcgcgg 3276840

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 127     cggtctgctccgcggc 142
               ||||||||||||||||
Sbjct: 3471821 cggtctgctccgcggc 3471836

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 262     ggtgttccacagcctg 277
               ||||||||||||||||
Sbjct: 3495490 ggtgttccacagcctg 3495505

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 384     tcgactccatcgcccgcagc 403
               |||||||||||||| |||||
Sbjct: 3586301 tcgactccatcgccagcagc 3586282

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 400     cagcggcgtacgcgtg 415
               ||||||||||||||||
Sbjct: 3818011 cagcggcgtacgcgtg 3817996

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 245     gagcgcgagcgccagc 260
               ||||||||||||||||
Sbjct: 5317552 gagcgcgagcgccagc 5317567

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 376     ggccaatctcgactcc 391
               ||||||||||||||||
Sbjct: 6329001 ggccaatctcgactcc 6328986

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 391     catcgcccgcagcggc 406
               ||||||||||||||||
Sbjct: 6455371 catcgcccgcagcggc 6455356

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 251    gagcgccagcaggtg 265
              |||||||||||||||
Sbjct: 138206 gagcgccagcaggtg 138220

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 103    ggtcggcccgaccga 117
              |||||||||||||||
Sbjct: 150368 ggtcggcccgaccga 150382

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 198    cggacctcggcacgc 212
              |||||||||||||||
Sbjct: 527893 cggacctcggcacgc 527879

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 187    ggtggacaacccgga 201
              |||||||||||||||
Sbjct: 621768 ggtggacaacccgga 621782

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 249    gcgagcgccagcagg 263
              |||||||||||||||
Sbjct: 745720 gcgagcgccagcagg 745706

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 148     gcaggccaatggcag 162
               |||||||||||||||
Sbjct: 1090397 gcaggccaatggcag 1090411

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 163     gcgcgtgcatgcggaacgc 181
               ||||| |||||||||||||
Sbjct: 1184176 gcgcgggcatgcggaacgc 1184158

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 242     gacgagcgcgagcgccagc 260
               ||||||||||| |||||||
Sbjct: 1217446 gacgagcgcgaacgccagc 1217428

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 249     gcgagcgccagcagg 263
               |||||||||||||||
Sbjct: 1353509 gcgagcgccagcagg 1353495

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 249     gcgagcgccagcagg 263
               |||||||||||||||
Sbjct: 1400746 gcgagcgccagcagg 1400760

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 432     aactggcaaggcggc 446
               |||||||||||||||
Sbjct: 1604522 aactggcaaggcggc 1604508

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 179     cgccgcgcggtggac 193
               |||||||||||||||
Sbjct: 1740932 cgccgcgcggtggac 1740946

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 372     tcgaggccaatctcg 386
               |||||||||||||||
Sbjct: 1745159 tcgaggccaatctcg 1745173

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 183     gcgcggtggacaacc 197
               |||||||||||||||
Sbjct: 1813900 gcgcggtggacaacc 1813914

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 114     ccgagtacgccgacg 128
               |||||||||||||||
Sbjct: 1854059 ccgagtacgccgacg 1854045

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 62      gtgcgctggccgaag 76
               |||||||||||||||
Sbjct: 1881102 gtgcgctggccgaag 1881088

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 62      gtgcgctggccgaag 76
               |||||||||||||||
Sbjct: 1882407 gtgcgctggccgaag 1882393

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 62      gtgcgctggccgaag 76
               |||||||||||||||
Sbjct: 1902042 gtgcgctggccgaag 1902028

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 201     acctcggcacgctct 215
               |||||||||||||||
Sbjct: 1928366 acctcggcacgctct 1928380

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 291     tcctgtccatcagcg 305
               |||||||||||||||
Sbjct: 2000728 tcctgtccatcagcg 2000742

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 27/31 (87%)
 Strand = Plus / Plus

                                              
Query: 351     tcggcggtccgcgcatcaccttcgaggccaa 381
               ||||||| | |||| || |||||||||||||
Sbjct: 2115452 tcggcggccggcgcttcgccttcgaggccaa 2115482

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 239     gtcgacgagcgcgagcgcc 257
               |||| ||||||||||||||
Sbjct: 2312852 gtcgccgagcgcgagcgcc 2312834

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 255     gccagcaggtgttcc 269
               |||||||||||||||
Sbjct: 2328061 gccagcaggtgttcc 2328075

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 254     cgccagcaggtgttc 268
               |||||||||||||||
Sbjct: 2350946 cgccagcaggtgttc 2350960

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 244     cgagcgcgagcgccagcag 262
               ||||| |||||||||||||
Sbjct: 3252307 cgagcccgagcgccagcag 3252325

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 93      aactctgcgtggtcg 107
               |||||||||||||||
Sbjct: 3812917 aactctgcgtggtcg 3812903

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 61      cgtgcgctggccgaa 75
               |||||||||||||||
Sbjct: 4149461 cgtgcgctggccgaa 4149475

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 236     gtggtcgacgagcgc 250
               |||||||||||||||
Sbjct: 4228184 gtggtcgacgagcgc 4228170

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 56      tgttacgtgcgctggccga 74
               |||| ||||||||||||||
Sbjct: 5079038 tgttgcgtgcgctggccga 5079020

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 264     tgttccacagcctgg 278
               |||||||||||||||
Sbjct: 5132115 tgttccacagcctgg 5132101

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 102     tggtcggcccgaccg 116
               |||||||||||||||
Sbjct: 5238002 tggtcggcccgaccg 5238016

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 442     gcggcaggccactcc 456
               |||||||||||||||
Sbjct: 5285980 gcggcaggccactcc 5285994

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 63      tgcgctggccgaagg 77
               |||||||||||||||
Sbjct: 5432913 tgcgctggccgaagg 5432899

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 173     gcggaacgccgcgcg 187
               |||||||||||||||
Sbjct: 5691651 gcggaacgccgcgcg 5691665

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 271     cagcctggccgggca 285
               |||||||||||||||
Sbjct: 6279224 cagcctggccgggca 6279238
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6286
Number of Sequences: 1
Number of extensions: 6286
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of query: 871
length of database: 6,534,396
effective HSP length: 16
effective length of query: 855
effective length of database: 6,534,380
effective search space: 5586894900
effective search space used: 5586894900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)