BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (872 letters)

Distribution of 43 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           391   e-108 



>GCTS_68 
          Length = 6534396

 Score =  391 bits (197), Expect = e-108
 Identities = 200/201 (99%)
 Strand = Plus / Plus

                                                                           
Query: 59      tacgactacggctggttcaccggctcgctgctcggcggcgcgctctactacggcctctgc 118
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6314347 tacgactacggctggttcaccggctcgctgctcggcggcgcgctctactacggcctctgc 6314406

                                                                           
Query: 119     ggccgccgtgcgcggagcccggcggcattggccaaaccgctgccctgatgggcatacagg 178
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6314407 ggccgccgtgcgcggagcccggcggcattggccaaaccgctgccctgatgggcatacagg 6314466

                                                                           
Query: 179     cggccggcgagccgccgacacctactccaagcctgaggagacgacaatgagcactgcccg 238
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6314467 cggccggcgagccgccgacacctactccaagcctgaggagacgacaatgagcactgcccg 6314526

                                    
Query: 239     gaacgtcctgcaatacaccca 259
               |||||||||||||| ||||||
Sbjct: 6314527 gaacgtcctgcaatccaccca 6314547






 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 80      ggctcgctgctcggcggcgcgc 101
               ||||||||||||||||||||||
Sbjct: 1646802 ggctcgctgctcggcggcgcgc 1646823






 Score = 38.2 bits (19), Expect = 0.018
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 79     cggctcgctgctcggcggc 97
              |||||||||||||||||||
Sbjct: 669253 cggctcgctgctcggcggc 669271






 Score = 34.2 bits (17), Expect = 0.28
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                    
Query: 120     gccgccgtgcgcggagcccgg 140
               ||||||||||||| |||||||
Sbjct: 3538259 gccgccgtgcgcgaagcccgg 3538239






 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 271     ctggagggcctggccaa 287
               |||||||||||||||||
Sbjct: 4042702 ctggagggcctggccaa 4042718






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 87     tgctcggcggcgcgct 102
              ||||||||||||||||
Sbjct: 188711 tgctcggcggcgcgct 188726






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 80     ggctcgctgctcggcg 95
              ||||||||||||||||
Sbjct: 774736 ggctcgctgctcggcg 774721






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 88     gctcggcggcgcgctc 103
              ||||||||||||||||
Sbjct: 944152 gctcggcggcgcgctc 944137






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 177     ggcggccggcgagccg 192
               ||||||||||||||||
Sbjct: 1542842 ggcggccggcgagccg 1542827






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 88      gctcggcggcgcgctc 103
               ||||||||||||||||
Sbjct: 1568838 gctcggcggcgcgctc 1568823






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 81      gctcgctgctcggcggcgcg 100
               ||||| ||||||||||||||
Sbjct: 2643259 gctcgatgctcggcggcgcg 2643240






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 79      cggctcgctgctcggc 94
               ||||||||||||||||
Sbjct: 3293056 cggctcgctgctcggc 3293071






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 73      gttcaccggctcgctg 88
               ||||||||||||||||
Sbjct: 3339450 gttcaccggctcgctg 3339435






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 175     caggcggccggcgagc 190
               ||||||||||||||||
Sbjct: 3975528 caggcggccggcgagc 3975543






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 189     gccgccgacacctact 204
               ||||||||||||||||
Sbjct: 4453005 gccgccgacacctact 4452990






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 172     atacaggcggccggcg 187
               ||||||||||||||||
Sbjct: 5160959 atacaggcggccggcg 5160974






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 86      ctgctcggcggcgcgc 101
               ||||||||||||||||
Sbjct: 5419321 ctgctcggcggcgcgc 5419306






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 79      cggctcgctgctcggc 94
               ||||||||||||||||
Sbjct: 5990534 cggctcgctgctcggc 5990549






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 88      gctcggcggcgcgctc 103
               ||||||||||||||||
Sbjct: 6325460 gctcggcggcgcgctc 6325475






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 87      tgctcggcggcgcgct 102
               ||||||||||||||||
Sbjct: 6345138 tgctcggcggcgcgct 6345153






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 88     gctcggcggcgcgct 102
              |||||||||||||||
Sbjct: 157023 gctcggcggcgcgct 157037






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 88     gctcggcggcgcgct 102
              |||||||||||||||
Sbjct: 624962 gctcggcggcgcgct 624948






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 79     cggctcgctgctcggcggc 97
              |||| ||||||||||||||
Sbjct: 745631 cggcccgctgctcggcggc 745649






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 84     cgctgctcggcggcg 98
              |||||||||||||||
Sbjct: 873193 cgctgctcggcggcg 873207






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 183     cggcgagccgccgac 197
               |||||||||||||||
Sbjct: 1816062 cggcgagccgccgac 1816048






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 175     caggcggccggcgag 189
               |||||||||||||||
Sbjct: 2188517 caggcggccggcgag 2188503






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 86      ctgctcggcggcgcg 100
               |||||||||||||||
Sbjct: 2365543 ctgctcggcggcgcg 2365557






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 88      gctcggcggcgcgct 102
               |||||||||||||||
Sbjct: 3041742 gctcggcggcgcgct 3041756






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 240     aacgtcctgcaatac 254
               |||||||||||||||
Sbjct: 3103658 aacgtcctgcaatac 3103644






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 127     tgcgcggagcccggcggca 145
               |||||| ||||||||||||
Sbjct: 3395543 tgcgcgcagcccggcggca 3395561






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 273     ggagggcctggccaa 287
               |||||||||||||||
Sbjct: 3564661 ggagggcctggccaa 3564647






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 86      ctgctcggcggcgcg 100
               |||||||||||||||
Sbjct: 3702094 ctgctcggcggcgcg 3702080






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 174     acaggcggccggcgagccg 192
               ||||||| |||||||||||
Sbjct: 3813398 acaggcgcccggcgagccg 3813416






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 78      ccggctcgctgctcggcgg 96
               ||||| |||||||||||||
Sbjct: 3919756 ccggcgcgctgctcggcgg 3919774






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 85      gctgctcggcggcgc 99
               |||||||||||||||
Sbjct: 5025418 gctgctcggcggcgc 5025404






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 182     ccggcgagccgccga 196
               |||||||||||||||
Sbjct: 5198800 ccggcgagccgccga 5198814






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 82      ctcgctgctcggcgg 96
               |||||||||||||||
Sbjct: 5652886 ctcgctgctcggcgg 5652872






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 181     gccggcgagccgccg 195
               |||||||||||||||
Sbjct: 5864924 gccggcgagccgccg 5864910






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 151     caaaccgctgccctg 165
               |||||||||||||||
Sbjct: 5920508 caaaccgctgccctg 5920522






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 137     ccggcggcattggcc 151
               |||||||||||||||
Sbjct: 6160868 ccggcggcattggcc 6160882






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 175     caggcggccggcgag 189
               |||||||||||||||
Sbjct: 6189547 caggcggccggcgag 6189533






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 84      cgctgctcggcggcg 98
               |||||||||||||||
Sbjct: 6228945 cgctgctcggcggcg 6228931






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 66      acggctggttcaccg 80
               |||||||||||||||
Sbjct: 6418057 acggctggttcaccg 6418071






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4308
Number of Sequences: 1
Number of extensions: 4308
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of query: 872
length of database: 6,534,396
effective HSP length: 16
effective length of query: 856
effective length of database: 6,534,380
effective search space: 5593429280
effective search space used: 5593429280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)