BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (859 letters)

Distribution of 60 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           581   e-166 

>GCTS_68 
          Length = 6534396

 Score =  581 bits (293), Expect = e-166
 Identities = 308/313 (98%)
 Strand = Plus / Minus

                                                                           
Query: 59      taccatgagcacctgccgcgcgaatactgcgtgcaggccggcgacagcgatcactacctg 118
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6089208 taccatgagcacctgccgcgcgaatactgcgtgcaggccggcgacagcgatcactacctg 6089149

                                                                           
Query: 119     cacgaccggctggctttcgaggaaggcctggtctactacttccgcttcgacgaacaccgc 178
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6089148 cacgaccggctggctttcgaggaaggcctggtctactacttccgcttcgacgaacaccgc 6089089

                                                                           
Query: 179     cacaccctggtctgcgccgaccgggtcaacgtccaggagcgtatcgccggcggcccggta 238
               |||||||||||||||  ||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 6089088 cacaccctggtctgcagcgaccggctctacgtccaggagcgtatcgccggcggcccggta 6089029

                                                                           
Query: 239     ctgttcagcgcccagccggagggcgacaacccgcagccggtgcttcattccttccgctac 298
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6089028 ctgttcagcgcccagccggagggcgacaacccgcagccggtgcttcattccttccgctac 6088969

                                                                           
Query: 299     agcgaaaatgttcgtacggctcgacagacccagcgggactacagcttcaagcgcccgaca 358
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 6088968 agcgaaaatgttcgtacggctcgacagacccagcgggactacagcttcaagcgcccgacc 6088909

                            
Query: 359     tacgaccaggagc 371
               |||||||||||||
Sbjct: 6088908 tacgaccaggagc 6088896




 Score =  549 bits (277), Expect = e-156
 Identities = 304/313 (97%)
 Strand = Plus / Minus

                                                                          
Query: 59     taccatgagcacctgccgcgcgaatactgcgtgcaggccggcgacagcgatcactacctg 118
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952715 taccatgagcacctgccgcgcgaatactgcgtgcaggccggcgacagcgatcactacctg 952656

                                                                          
Query: 119    cacgaccggctggctttcgaggaaggcctggtctactacttccgcttcgacgaacaccgc 178
              ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952655 cacgaccggctagccttcgaggaaggcctggtctactacttccgcttcgacgaacaccgc 952596

                                                                          
Query: 179    cacaccctggtctgcgccgaccgggtcaacgtccaggagcgtatcgccggcggcccggta 238
              |||||||||||||||  ||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 952595 cacaccctggtctgcagcgaccggctctacgtccaggagcgtatcgccggcggcccggta 952536

                                                                          
Query: 239    ctgttcagcgcccagccggagggcgacaacccgcagccggtgcttcattccttccgctac 298
              |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 952535 ctgttcagcgcccagccggagggcgacaacccacagccggtgcttcattctttccgctac 952476

                                                                          
Query: 299    agcgaaaatgttcgtacggctcgacagacccagcgggactacagcttcaagcgcccgaca 358
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 952475 agcgaaaatgttcgtacggctcgacagacccagcgggactacagcttcaagcgcccgacc 952416

                           
Query: 359    tacgaccaggagc 371
              |||||||||||||
Sbjct: 952415 tacgaccaggagc 952403




 Score = 40.1 bits (20), Expect = 0.005
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 77      cgcgaatactgcgtgcaggccggcgacagcga 108
               ||||||||||||||||||  |||||| |||||
Sbjct: 1934749 cgcgaatactgcgtgcagtacggcgagagcga 1934780




 Score = 38.2 bits (19), Expect = 0.018
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 76      gcgcgaatactgcgtgcag 94
               |||||||||||||||||||
Sbjct: 1120884 gcgcgaatactgcgtgcag 1120866




 Score = 38.2 bits (19), Expect = 0.018
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 76      gcgcgaatactgcgtgcag 94
               |||||||||||||||||||
Sbjct: 3094932 gcgcgaatactgcgtgcag 3094914




 Score = 38.2 bits (19), Expect = 0.018
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 76      gcgcgaatactgcgtgcag 94
               |||||||||||||||||||
Sbjct: 3312954 gcgcgaatactgcgtgcag 3312972




 Score = 38.2 bits (19), Expect = 0.018
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 76      gcgcgaatactgcgtgcag 94
               |||||||||||||||||||
Sbjct: 5469157 gcgcgaatactgcgtgcag 5469139




 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 121    cgaccggctggctttcg 137
              |||||||||||||||||
Sbjct: 431511 cgaccggctggctttcg 431495




 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 211     ccaggagcgtatcgccg 227
               |||||||||||||||||
Sbjct: 1090592 ccaggagcgtatcgccg 1090608




 Score = 34.2 bits (17), Expect = 0.28
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                    
Query: 180     acaccctggtctgcgccgacc 200
               ||||||||||| |||||||||
Sbjct: 1208725 acaccctggtcagcgccgacc 1208705




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                  
Query: 192    gcgccgaccgggtcaacgtc 211
              ||||||||||||||| ||||
Sbjct: 267980 gcgccgaccgggtcatcgtc 267999




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 462     gccggtcttttcgctg 477
               ||||||||||||||||
Sbjct: 1179124 gccggtcttttcgctg 1179109




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 88      cgtgcaggccggcgac 103
               ||||||||||||||||
Sbjct: 2125341 cgtgcaggccggcgac 2125356




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 267     acccgcagccggtgct 282
               ||||||||||||||||
Sbjct: 2368187 acccgcagccggtgct 2368202




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 135     tcgaggaaggcctggt 150
               ||||||||||||||||
Sbjct: 2693868 tcgaggaaggcctggt 2693853




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 213     aggagcgtatcgccggcggc 232
               ||||||||||||||| ||||
Sbjct: 2701595 aggagcgtatcgccgacggc 2701576




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 91      gcaggccggcgacagc 106
               ||||||||||||||||
Sbjct: 2725815 gcaggccggcgacagc 2725800




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 89      gtgcaggccggcgaca 104
               ||||||||||||||||
Sbjct: 2820327 gtgcaggccggcgaca 2820312




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 94      ggccggcgacagcgat 109
               ||||||||||||||||
Sbjct: 3239185 ggccggcgacagcgat 3239170




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 157     cttccgcttcgacgaa 172
               ||||||||||||||||
Sbjct: 3311946 cttccgcttcgacgaa 3311961




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 73      gccgcgcgaatactgcgtgc 92
               ||||||||||||||| ||||
Sbjct: 3798381 gccgcgcgaatactgggtgc 3798400




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 89      gtgcaggccggcgaca 104
               ||||||||||||||||
Sbjct: 4205093 gtgcaggccggcgaca 4205078




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 222     tcgccggcggcccggt 237
               ||||||||||||||||
Sbjct: 4269494 tcgccggcggcccggt 4269509




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 453     cggtcgtgtgccggtc 468
               ||||||||||||||||
Sbjct: 4599598 cggtcgtgtgccggtc 4599613




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 585     ttcgactacagcgccg 600
               ||||||||||||||||
Sbjct: 5784845 ttcgactacagcgccg 5784830




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 178     ccacaccctggtctgcgccg 197
               ||||||||||||| ||||||
Sbjct: 5908145 ccacaccctggtcggcgccg 5908164




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 216    agcgtatcgccggcg 230
              |||||||||||||||
Sbjct: 536884 agcgtatcgccggcg 536898




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 90     tgcaggccggcgaca 104
              |||||||||||||||
Sbjct: 576349 tgcaggccggcgaca 576363




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 161    cgcttcgacgaacac 175
              |||||||||||||||
Sbjct: 797221 cgcttcgacgaacac 797235




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 227     ggcggcccggtactg 241
               |||||||||||||||
Sbjct: 1132191 ggcggcccggtactg 1132205




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 135     tcgaggaaggcctgg 149
               |||||||||||||||
Sbjct: 1170442 tcgaggaaggcctgg 1170428




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 166     cgacgaacaccgcca 180
               |||||||||||||||
Sbjct: 1302923 cgacgaacaccgcca 1302937




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 63      atgagcacctgccgc 77
               |||||||||||||||
Sbjct: 1439161 atgagcacctgccgc 1439175




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 67      gcacctgccgcgcga 81
               |||||||||||||||
Sbjct: 1704758 gcacctgccgcgcga 1704772




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 94      ggccggcgacagcga 108
               |||||||||||||||
Sbjct: 1924713 ggccggcgacagcga 1924727




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 587     cgactacagcgccgg 601
               |||||||||||||||
Sbjct: 2001152 cgactacagcgccgg 2001166




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 523     gaatcaacgactacc 537
               |||||||||||||||
Sbjct: 2162463 gaatcaacgactacc 2162449




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 161     cgcttcgacgaacaccgcc 179
               |||||||||||||| ||||
Sbjct: 2550507 cgcttcgacgaacaacgcc 2550525




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 135     tcgaggaaggcctgg 149
               |||||||||||||||
Sbjct: 2576633 tcgaggaaggcctgg 2576647




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 105     gcgatcactacctgc 119
               |||||||||||||||
Sbjct: 2711153 gcgatcactacctgc 2711167




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 222     tcgccggcggcccgg 236
               |||||||||||||||
Sbjct: 3135793 tcgccggcggcccgg 3135807




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 135     tcgaggaaggcctgg 149
               |||||||||||||||
Sbjct: 3162070 tcgaggaaggcctgg 3162084




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 93      aggccggcgacagcg 107
               |||||||||||||||
Sbjct: 3237086 aggccggcgacagcg 3237072




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 239     ctgttcagcgcccag 253
               |||||||||||||||
Sbjct: 3285256 ctgttcagcgcccag 3285270




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 165     tcgacgaacaccgcc 179
               |||||||||||||||
Sbjct: 3286412 tcgacgaacaccgcc 3286426




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 93      aggccggcgacagcg 107
               |||||||||||||||
Sbjct: 3823112 aggccggcgacagcg 3823098




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 185     ctggtctgcgccgac 199
               |||||||||||||||
Sbjct: 3859842 ctggtctgcgccgac 3859828




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 135     tcgaggaaggcctgg 149
               |||||||||||||||
Sbjct: 4309559 tcgaggaaggcctgg 4309545




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 260     ggcgacaacccgcag 274
               |||||||||||||||
Sbjct: 4476213 ggcgacaacccgcag 4476199




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 65      gagcacctgccgcgc 79
               |||||||||||||||
Sbjct: 4763341 gagcacctgccgcgc 4763355




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 440     gcttctcgctgggcg 454
               |||||||||||||||
Sbjct: 5117582 gcttctcgctgggcg 5117568




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 607     gccagttccagtggt 621
               |||||||||||||||
Sbjct: 5211191 gccagttccagtggt 5211177




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 115     cctgcacgaccggct 129
               |||||||||||||||
Sbjct: 5821871 cctgcacgaccggct 5821857




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 195     ccgaccgggtcaacg 209
               |||||||||||||||
Sbjct: 5905342 ccgaccgggtcaacg 5905356




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 80      gaatactgcgtgcag 94
               |||||||||||||||
Sbjct: 5910391 gaatactgcgtgcag 5910405




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 80      gaatactgcgtgcag 94
               |||||||||||||||
Sbjct: 5915052 gaatactgcgtgcag 5915066




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 93      aggccggcgacagcg 107
               |||||||||||||||
Sbjct: 5986277 aggccggcgacagcg 5986263




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 85      ctgcgtgcaggccggcgac 103
               ||||||| |||||||||||
Sbjct: 6167427 ctgcgtgaaggccggcgac 6167409




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 135     tcgaggaaggcctgg 149
               |||||||||||||||
Sbjct: 6176412 tcgaggaaggcctgg 6176426




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 726     tagcgccccgaaacc 740
               |||||||||||||||
Sbjct: 6244852 tagcgccccgaaacc 6244838




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5495
Number of Sequences: 1
Number of extensions: 5495
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of query: 859
length of database: 6,534,396
effective HSP length: 16
effective length of query: 843
effective length of database: 6,534,380
effective search space: 5508482340
effective search space used: 5508482340
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)