BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (857 letters)

Distribution of 25 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                          1223   0.0   
>GCTS_68 
          Length = 6534396

 Score = 1223 bits (617), Expect = 0.0
 Identities = 663/676 (98%), Gaps = 3/676 (0%)
 Strand = Plus / Plus

                                                                          
Query: 25     tcggtgtcgcccggcacttacagcgtcgacattcatttgaaccagatcatgatccggcgc 84
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378936 tcggtgtcgcccggcacttacagcgtcgacattcatttgaaccagatcatgatccggcgc 378995

                                                                          
Query: 85     gaagatgtcgtgttcagtgccgatcccgacaccggaagcgttcgcccgatcattcggatg 144
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378996 gaagatgtcgtgttcagtgccgatcccgacaccggaagcgttcgcccgatcattcggatg 379055

                                                                          
Query: 145    ggcctgctcaaggagattggggtcgatatcgcccggctgactcgggacaagctcattccg 204
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379056 ggcctgctcaaggagattggggtcgatatcgcccggctgactcgggacaagctcattccg 379115

                                                                          
Query: 205    gccaacctggaaaacaatacgcccctgaatgtcgccgaactcatccccggtgcatccgta 264
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379116 gccaacctggaaaacaatacgcccctgaatgtcgccgaactcatccccggtgcatccgta 379175

                                                                          
Query: 265    gagttcgacgtcaacagcctttccctgctggtcagcattccacagctgtatgtacagcgg 324
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379176 gagttcgacgtcaacagcctttccctgctggtcagcattccacagctgtatgtacagcgg 379235

                                                                          
Query: 325    cactcgcgtggctatgtggatccctctctttgggatgacggcgtcaccgcgttgttttcc 384
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379236 cactcgcgtggctatgtggatccctctctttgggatgacggcgtcaccgcgttgttttcc 379295

                                                                          
Query: 385    aactaccaggccaacttcacgcgcaacaccaattttggccagaacagcgattaccgctac 444
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379296 aactaccaggccaacttcacgcgcaacaccaattttggccagaacagcgattaccgctac 379355

                                                                          
Query: 445    ctgggtctgcgcaacggcttcaacctgtttggctggcgcctgcgcaacgactcttccctg 504
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379356 ctgggtctgcgcaacggcttcaacctgtttggctggcgcctgcgcaacgactcttccctg 379415

                                                                          
Query: 505    aacggaggtaccggcatgcgcaacaagttcagtagcaaccgtacctatgtggaacgtgac 564
              | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379416 agcggaggtaccggcatgcgcaacaagttcagtagcaaccgtacctatgtggaacgtgac 379475

                                                                          
Query: 565    attcgtgccctgaaggggaccttgtccctcggggagttgtataccctcccgctcaggggg 624
              |||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||
Sbjct: 379476 attcgtgccctgaaggggaccttgtccctcggtgagttgtatacc--tccgctcaggggg 379533

                                                                          
Query: 625    atgcttttcaaagcgtgcgtatgcccggcgtgcaaactggaatcccatatcggcatgttg 684
              |||||||  | ||||||||||||| |||||||| ||||| ||||| ||||||||||| ||
Sbjct: 379534 atgctttcgagagcgtgcgtatgcgcggcgtgc-aactgcaatccgatatcggcatgctg 379592

                              
Query: 685    cccgacaacgagatca 700
              ||||||||||||||||
Sbjct: 379593 cccgacaacgagatca 379608

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 474     tggctggcgcctgcgcaacg 493
               ||||||||||||||||||||
Sbjct: 1048512 tggctggcgcctgcgcaacg 1048531

 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 268    ttcgacgtcaacagcct 284
              |||||||||||||||||
Sbjct: 143891 ttcgacgtcaacagcct 143875

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 384    caactaccaggccaac 399
              ||||||||||||||||
Sbjct: 471179 caactaccaggccaac 471194

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 15     gccaacctgttcggtg 30
              ||||||||||||||||
Sbjct: 702875 gccaacctgttcggtg 702890

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 474     tggctggcgcctgcgc 489
               ||||||||||||||||
Sbjct: 2610078 tggctggcgcctgcgc 2610093

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 146     gcctgctcaaggagat 161
               ||||||||||||||||
Sbjct: 2732007 gcctgctcaaggagat 2732022

 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 146     gcctgctcaaggagat 161
               ||||||||||||||||
Sbjct: 5998213 gcctgctcaaggagat 5998198

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 288     cctgctggtcagcat 302
               |||||||||||||||
Sbjct: 1342941 cctgctggtcagcat 1342927

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 204     ggccaacctggaaaa 218
               |||||||||||||||
Sbjct: 1486719 ggccaacctggaaaa 1486705

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 476     gctggcgcctgcgca 490
               |||||||||||||||
Sbjct: 2202584 gctggcgcctgcgca 2202570

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 74      tgatccggcgcgaag 88
               |||||||||||||||
Sbjct: 2486884 tgatccggcgcgaag 2486898

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 205     gccaacctggaaaac 219
               |||||||||||||||
Sbjct: 2676744 gccaacctggaaaac 2676758

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 145     ggcctgctcaaggag 159
               |||||||||||||||
Sbjct: 2806688 ggcctgctcaaggag 2806674

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 64      aaccagatcatgatc 78
               |||||||||||||||
Sbjct: 3479727 aaccagatcatgatc 3479713

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 422     gccagaacagcgatt 436
               |||||||||||||||
Sbjct: 3996180 gccagaacagcgatt 3996194

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 260     ccgtagagttcgacg 274
               |||||||||||||||
Sbjct: 4324493 ccgtagagttcgacg 4324507

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 481     cgcctgcgcaacgac 495
               |||||||||||||||
Sbjct: 4526982 cgcctgcgcaacgac 4526996

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 202     ccggccaacctggaa 216
               |||||||||||||||
Sbjct: 4871462 ccggccaacctggaa 4871448

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 690     caacgagatcaacct 704
               |||||||||||||||
Sbjct: 5646804 caacgagatcaacct 5646818

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 199     attccggccaacctg 213
               |||||||||||||||
Sbjct: 5957203 attccggccaacctg 5957217

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 475     ggctggcgcctgcgc 489
               |||||||||||||||
Sbjct: 6184278 ggctggcgcctgcgc 6184264

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 355     tgggatgacggcgtcaccg 373
               ||||| |||||||||||||
Sbjct: 6223964 tgggacgacggcgtcaccg 6223946

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 382     tccaactaccaggcc 396
               |||||||||||||||
Sbjct: 6468557 tccaactaccaggcc 6468543

 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 145     ggcctgctcaaggag 159
               |||||||||||||||
Sbjct: 6496909 ggcctgctcaaggag 6496923
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4406
Number of Sequences: 1
Number of extensions: 4406
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of query: 857
length of database: 6,534,396
effective HSP length: 16
effective length of query: 841
effective length of database: 6,534,380
effective search space: 5495413580
effective search space used: 5495413580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)