BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (70 letters)

Distribution of 85 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                            54   2e-08 

>GCTS_68 
          Length = 6534396

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                          
Query: 25      tagtaatccagggccagcgcttgcagg 51
               |||||||||||||||||||||||||||
Sbjct: 1249595 tagtaatccagggccagcgcttgcagg 1249621




 Score = 36.2 bits (18), Expect = 0.005
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 36      ggccagcgcttgcagggt 53
               ||||||||||||||||||
Sbjct: 2460391 ggccagcgcttgcagggt 2460374




 Score = 32.2 bits (16), Expect = 0.074
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 36      ggccagcgcttgcagggtgg 55
               ||||||||||||| ||||||
Sbjct: 3477104 ggccagcgcttgcggggtgg 3477123




 Score = 30.2 bits (15), Expect = 0.29
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 37      gccagcgcttgcagg 51
               |||||||||||||||
Sbjct: 3960378 gccagcgcttgcagg 3960364




 Score = 30.2 bits (15), Expect = 0.29
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 56      ggcaggccgccaggc 70
               |||||||||||||||
Sbjct: 4647265 ggcaggccgccaggc 4647279




 Score = 30.2 bits (15), Expect = 0.29
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 56      ggcaggccgccaggc 70
               |||||||||||||||
Sbjct: 6028683 ggcaggccgccaggc 6028669




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 31     tccagggccagcgc 44
              ||||||||||||||
Sbjct: 170416 tccagggccagcgc 170403




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                
Query: 27     gtaatccagggccagcgc 44
              ||||| ||||||||||||
Sbjct: 645456 gtaatgcagggccagcgc 645439




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 31     tccagggccagcgc 44
              ||||||||||||||
Sbjct: 688005 tccagggccagcgc 688018




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 57     gcaggccgccaggc 70
              ||||||||||||||
Sbjct: 707100 gcaggccgccaggc 707087




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 32      ccagggccagcgcttgca 49
               ||||||||||||| ||||
Sbjct: 1560380 ccagggccagcgcctgca 1560363




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 31      tccagggccagcgc 44
               ||||||||||||||
Sbjct: 2061791 tccagggccagcgc 2061804




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 31      tccagggccagcgc 44
               ||||||||||||||
Sbjct: 2102859 tccagggccagcgc 2102872




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 56      ggcaggccgccagg 69
               ||||||||||||||
Sbjct: 2196454 ggcaggccgccagg 2196467




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 38      ccagcgcttgcagg 51
               ||||||||||||||
Sbjct: 2381945 ccagcgcttgcagg 2381932




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 30      atccagggccagcg 43
               ||||||||||||||
Sbjct: 2546996 atccagggccagcg 2547009




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 57      gcaggccgccaggc 70
               ||||||||||||||
Sbjct: 3605740 gcaggccgccaggc 3605753




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 32      ccagggccagcgct 45
               ||||||||||||||
Sbjct: 3806079 ccagggccagcgct 3806066




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 37      gccagcgcttgcag 50
               ||||||||||||||
Sbjct: 4170069 gccagcgcttgcag 4170056




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 57      gcaggccgccaggc 70
               ||||||||||||||
Sbjct: 5223304 gcaggccgccaggc 5223317




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 37      gccagcgcttgcag 50
               ||||||||||||||
Sbjct: 5692165 gccagcgcttgcag 5692152




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 53      tggggcaggccgcc 66
               ||||||||||||||
Sbjct: 5975186 tggggcaggccgcc 5975173




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 32      ccagggccagcgct 45
               ||||||||||||||
Sbjct: 6399677 ccagggccagcgct 6399690




 Score = 28.2 bits (14), Expect = 1.1
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 38      ccagcgcttgcagg 51
               ||||||||||||||
Sbjct: 6526382 ccagcgcttgcagg 6526395




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 31     tccagggccagcg 43
              |||||||||||||
Sbjct: 138300 tccagggccagcg 138312




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 58     caggccgccaggc 70
              |||||||||||||
Sbjct: 160015 caggccgccaggc 160003




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 52     gtggggcaggccg 64
              |||||||||||||
Sbjct: 255540 gtggggcaggccg 255552




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 32     ccagggccagcgc 44
              |||||||||||||
Sbjct: 693780 ccagggccagcgc 693768




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                           
Query: 58     caggccgccaggc 70
              |||||||||||||
Sbjct: 722755 caggccgccaggc 722767




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 57     gcaggccgccagg 69
              |||||||||||||
Sbjct: 755220 gcaggccgccagg 755208




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 32     ccagggccagcgc 44
              |||||||||||||
Sbjct: 785307 ccagggccagcgc 785295




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 56     ggcaggccgccag 68
              |||||||||||||
Sbjct: 794727 ggcaggccgccag 794715




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                           
Query: 32     ccagggccagcgc 44
              |||||||||||||
Sbjct: 887886 ccagggccagcgc 887874




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 36      ggccagcgcttgc 48
               |||||||||||||
Sbjct: 1083323 ggccagcgcttgc 1083335




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 1091258 ccagggccagcgc 1091246




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 16/17 (94%)
 Strand = Plus / Minus

                                
Query: 38      ccagcgcttgcagggtg 54
               ||||||||||| |||||
Sbjct: 1226549 ccagcgcttgcggggtg 1226533




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 1239430 ccagggccagcgc 1239418




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 58      caggccgccaggc 70
               |||||||||||||
Sbjct: 1425039 caggccgccaggc 1425027




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 57      gcaggccgccagg 69
               |||||||||||||
Sbjct: 1514660 gcaggccgccagg 1514672




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 1597203 ccagggccagcgc 1597215




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 30      atccagggccagc 42
               |||||||||||||
Sbjct: 1768758 atccagggccagc 1768746




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 39      cagcgcttgcagg 51
               |||||||||||||
Sbjct: 2031774 cagcgcttgcagg 2031786




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 54      ggggcaggccgcc 66
               |||||||||||||
Sbjct: 2116986 ggggcaggccgcc 2116974




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 2154072 ccagggccagcgc 2154084




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 16/17 (94%)
 Strand = Plus / Plus

                                
Query: 32      ccagggccagcgcttgc 48
               ||||| |||||||||||
Sbjct: 2187892 ccaggcccagcgcttgc 2187908




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 57      gcaggccgccagg 69
               |||||||||||||
Sbjct: 2219141 gcaggccgccagg 2219129




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 45      ttgcagggtgggg 57
               |||||||||||||
Sbjct: 2284668 ttgcagggtgggg 2284656




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 40      agcgcttgcaggg 52
               |||||||||||||
Sbjct: 2448392 agcgcttgcaggg 2448380




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 30      atccagggccagc 42
               |||||||||||||
Sbjct: 2453757 atccagggccagc 2453769




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 37      gccagcgcttgca 49
               |||||||||||||
Sbjct: 2456208 gccagcgcttgca 2456196




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 43      gcttgcagggtgg 55
               |||||||||||||
Sbjct: 2457184 gcttgcagggtgg 2457172




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 2586256 ccagggccagcgc 2586268




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 56      ggcaggccgccag 68
               |||||||||||||
Sbjct: 2669000 ggcaggccgccag 2669012




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 2673583 ccagggccagcgc 2673571




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 30      atccagggccagc 42
               |||||||||||||
Sbjct: 2748769 atccagggccagc 2748781




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 38      ccagcgcttgcag 50
               |||||||||||||
Sbjct: 2804414 ccagcgcttgcag 2804426




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 57      gcaggccgccagg 69
               |||||||||||||
Sbjct: 3237198 gcaggccgccagg 3237210




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 3305761 ccagggccagcgc 3305749




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 54      ggggcaggccgcc 66
               |||||||||||||
Sbjct: 3346593 ggggcaggccgcc 3346581




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 3351666 ccagggccagcgc 3351654




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 3869546 ccagggccagcgc 3869534




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 4137673 ccagggccagcgc 4137661




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 4252984 ccagggccagcgc 4252996




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 49      agggtggggcagg 61
               |||||||||||||
Sbjct: 4272655 agggtggggcagg 4272667




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 4303931 ccagggccagcgc 4303943




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 30      atccagggccagc 42
               |||||||||||||
Sbjct: 4643853 atccagggccagc 4643865




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 52      gtggggcaggccg 64
               |||||||||||||
Sbjct: 4696542 gtggggcaggccg 4696530




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 39      cagcgcttgcagg 51
               |||||||||||||
Sbjct: 4759274 cagcgcttgcagg 4759262




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 4769252 ccagggccagcgc 4769264




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 4923096 ccagggccagcgc 4923108




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 30      atccagggccagc 42
               |||||||||||||
Sbjct: 5073452 atccagggccagc 5073464




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 5183683 ccagggccagcgc 5183671




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 5244929 ccagggccagcgc 5244917




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 5496679 ccagggccagcgc 5496667




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 16/17 (94%)
 Strand = Plus / Minus

                                
Query: 36      ggccagcgcttgcaggg 52
               |||| ||||||||||||
Sbjct: 5511522 ggcctgcgcttgcaggg 5511506




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 49      agggtggggcagg 61
               |||||||||||||
Sbjct: 5825162 agggtggggcagg 5825150




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 5885820 ccagggccagcgc 5885832




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 30      atccagggccagc 42
               |||||||||||||
Sbjct: 6097190 atccagggccagc 6097178




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 30      atccagggccagc 42
               |||||||||||||
Sbjct: 6230356 atccagggccagc 6230368




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 31      tccagggccagcg 43
               |||||||||||||
Sbjct: 6282367 tccagggccagcg 6282379




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                            
Query: 58      caggccgccaggc 70
               |||||||||||||
Sbjct: 6315795 caggccgccaggc 6315783




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 16/17 (94%)
 Strand = Plus / Plus

                                
Query: 38      ccagcgcttgcagggtg 54
               ||||||||||| |||||
Sbjct: 6320917 ccagcgcttgctgggtg 6320933




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 39      cagcgcttgcagg 51
               |||||||||||||
Sbjct: 6327198 cagcgcttgcagg 6327210




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 32      ccagggccagcgc 44
               |||||||||||||
Sbjct: 6351542 ccagggccagcgc 6351554




 Score = 26.3 bits (13), Expect = 4.5
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                            
Query: 30      atccagggccagc 42
               |||||||||||||
Sbjct: 6431024 atccagggccagc 6431036




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 893
Number of Sequences: 1
Number of extensions: 893
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of query: 70
length of database: 6,534,396
effective HSP length: 14
effective length of query: 56
effective length of database: 6,534,382
effective search space: 365925392
effective search space used: 365925392
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)