BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (881 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           359   4e-99 

>GCTS_68 
          Length = 6534396

 Score =  359 bits (181), Expect = 4e-99
 Identities = 181/181 (100%)
 Strand = Plus / Minus

                                                                          
Query: 25     tagccctgcgcgtagatgctggcgatcgcctcgtccagatacttcgagatattgaaacag 84
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401453 tagccctgcgcgtagatgctggcgatcgcctcgtccagatacttcgagatattgaaacag 401394

                                                                          
Query: 85     gcgcaaacgacggaaacgagcggacgcatttcttcctccccagccccggatccgggactc 144
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401393 gcgcaaacgacggaaacgagcggacgcatttcttcctccccagccccggatccgggactc 401334

                                                                          
Query: 145    ggcacaaaccgataacctggctgcccgtcggaaggaaaccgtgccatgcagctcggccac 204
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401333 ggcacaaaccgataacctggctgcccgtcggaaggaaaccgtgccatgcagctcggccac 401274

               
Query: 205    a 205
              |
Sbjct: 401273 a 401273




 Score = 40.1 bits (20), Expect = 0.005
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 31      tgcgcgtagatgctggcgatcgcc 54
               |||||| |||||||||||||||||
Sbjct: 5942316 tgcgcgcagatgctggcgatcgcc 5942293




 Score = 36.2 bits (18), Expect = 0.073
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 227    ccgggatactatactaataaga 248
              ||||||||||||||||| ||||
Sbjct: 401251 ccgggatactatactaagaaga 401230




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 47     cgatcgcctcgtccag 62
              ||||||||||||||||
Sbjct: 629184 cgatcgcctcgtccag 629199




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 26      agccctgcgcgtagat 41
               ||||||||||||||||
Sbjct: 1949194 agccctgcgcgtagat 1949209




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 39      gatgctggcgatcgcc 54
               ||||||||||||||||
Sbjct: 2192589 gatgctggcgatcgcc 2192574




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 43      ctggcgatcgcctcgt 58
               ||||||||||||||||
Sbjct: 5153242 ctggcgatcgcctcgt 5153257




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 39      gatgctggcgatcgcc 54
               ||||||||||||||||
Sbjct: 5928884 gatgctggcgatcgcc 5928899




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 289    cctcccttttccctt 303
              |||||||||||||||
Sbjct: 488550 cctcccttttccctt 488564




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 175     gaaggaaaccgtgcc 189
               |||||||||||||||
Sbjct: 1742349 gaaggaaaccgtgcc 1742335




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 490     tctcctttatttcca 504
               |||||||||||||||
Sbjct: 3020105 tctcctttatttcca 3020091




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 210     ctgcgcgcctgggca 224
               |||||||||||||||
Sbjct: 3140630 ctgcgcgcctgggca 3140616




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 35      cgtagatgctggcga 49
               |||||||||||||||
Sbjct: 3383237 cgtagatgctggcga 3383223




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 193     cagctcggccacatc 207
               |||||||||||||||
Sbjct: 4660078 cagctcggccacatc 4660064




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 41      tgctggcgatcgcct 55
               |||||||||||||||
Sbjct: 4768308 tgctggcgatcgcct 4768322




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 442     ctcttttttatcttt 456
               |||||||||||||||
Sbjct: 4827639 ctcttttttatcttt 4827625




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 365     tttgtttttctgctc 379
               |||||||||||||||
Sbjct: 4851133 tttgtttttctgctc 4851119




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 49      atcgcctcgtccaga 63
               |||||||||||||||
Sbjct: 5077862 atcgcctcgtccaga 5077876




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 390     ttttttttgtttttt 404
               |||||||||||||||
Sbjct: 5334362 ttttttttgtttttt 5334348




 Score = 30.2 bits (15), Expect = 4.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 39      gatgctggcgatcgc 53
               |||||||||||||||
Sbjct: 6138897 gatgctggcgatcgc 6138883




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2339
Number of Sequences: 1
Number of extensions: 2339
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of query: 881
length of database: 6,534,396
effective HSP length: 16
effective length of query: 865
effective length of database: 6,534,380
effective search space: 5652238700
effective search space used: 5652238700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)