BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters

Query= 
         (861 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           198   8e-51 

>GCTS_68 
          Length = 6534396

 Score =  198 bits (100), Expect = 8e-51
 Identities = 152/168 (90%), Gaps = 1/168 (0%)
 Strand = Plus / Plus

                                                                           
Query: 150     agaaaagtttcctcgccatccggataagggtgtcctcaatgtccatgcgcttgaaattgc 209
               ||||||||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 6046245 agaaaagtttcatcgccatcgggagaaggctgtcctcaatgtccatgcgcttgaaattgc 6046304

                                                                           
Query: 210     ggagaaaaaaacccggggccacgctggagaccctggacgagaagaccggccggaccaaga 269
                ||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 6046305 tgagaaaaaaactcggggtcacgctggagaccctggccgagaagaccggcctgaccaaga 6046364

                                                               
Query: 270     gctacgtgtcacaagaacaaacgcgggctgaacacgccctccattgcc 317
               ||||| |||| ||||  | | ||||||||||||||||| |||||||||
Sbjct: 6046365 gctacctgtc-caaggtcgagcgcgggctgaacacgccgtccattgcc 6046411




 Score = 36.2 bits (18), Expect = 0.071
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                     
Query: 63      gccgacctggctgatggagctc 84
               ||||||||||||||||| ||||
Sbjct: 4026614 gccgacctggctgatggcgctc 4026593




 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 244    ggacgagaagaccggcc 260
              |||||||||||||||||
Sbjct: 731825 ggacgagaagaccggcc 731841




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 231     cgctggagaccctgga 246
               ||||||||||||||||
Sbjct: 5982005 cgctggagaccctgga 5982020




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 355    ggtggagcaacagttctcc 373
              ||||| |||||||||||||
Sbjct: 607231 ggtggtgcaacagttctcc 607249




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 226     ggccacgctggagac 240
               |||||||||||||||
Sbjct: 1125389 ggccacgctggagac 1125375




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 245     gacgagaagaccggc 259
               |||||||||||||||
Sbjct: 1445139 gacgagaagaccggc 1445125




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 61      tggccgacctggctg 75
               |||||||||||||||
Sbjct: 1587253 tggccgacctggctg 1587239




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 66      gacctggctgatgga 80
               |||||||||||||||
Sbjct: 1910159 gacctggctgatgga 1910145




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 61      tggccgacctggctg 75
               |||||||||||||||
Sbjct: 2116097 tggccgacctggctg 2116083




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 61      tggccgacctggctg 75
               |||||||||||||||
Sbjct: 2489717 tggccgacctggctg 2489703




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 257     ggccggaccaagagctacg 275
               ||||||||||||| |||||
Sbjct: 3570883 ggccggaccaagacctacg 3570865




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 188     atgtccatgcgcttg 202
               |||||||||||||||
Sbjct: 3649536 atgtccatgcgcttg 3649550




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 62      ggccgacctggctga 76
               |||||||||||||||
Sbjct: 4755523 ggccgacctggctga 4755509




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 61      tggccgacctggctg 75
               |||||||||||||||
Sbjct: 5282700 tggccgacctggctg 5282686




 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 222     ccggggccacgctgg 236
               |||||||||||||||
Sbjct: 5341923 ccggggccacgctgg 5341909




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2345
Number of Sequences: 1
Number of extensions: 2345
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of query: 861
length of database: 6,534,396
effective HSP length: 16
effective length of query: 845
effective length of database: 6,534,380
effective search space: 5521551100
effective search space used: 5521551100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)