BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (819 letters)

Distribution of 71 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           513   e-145 

>GCTS_68 
          Length = 6534396

 Score =  513 bits (259), Expect = e-145
 Identities = 259/259 (100%)
 Strand = Plus / Plus

                                                                           
Query: 25      taccgttccggtgcatggcgacgcacgcggtctggaagcggtgctgctggagatccgcaa 84
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5738438 taccgttccggtgcatggcgacgcacgcggtctggaagcggtgctgctggagatccgcaa 5738497

                                                                           
Query: 85      cgatggattgcgcacgccggatgcggtgagcgcctgggccgagcgtctgtatccctggct 144
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5738498 cgatggattgcgcacgccggatgcggtgagcgcctgggccgagcgtctgtatccctggct 5738557

                                                                           
Query: 145     ctgatgcgatgaccggcgccgccggtcgccaataacgagaaagaggcccgcttcgcgtgc 204
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5738558 ctgatgcgatgaccggcgccgccggtcgccaataacgagaaagaggcccgcttcgcgtgc 5738617

                                                                           
Query: 205     ggcgccgataacgacaatacgctgccttttcccgaggagcccgtcatggccatcgaacag 264
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5738618 ggcgccgataacgacaatacgctgccttttcccgaggagcccgtcatggccatcgaacag 5738677

                                  
Query: 265     ttcggataccggcaacagc 283
               |||||||||||||||||||
Sbjct: 5738678 ttcggataccggcaacagc 5738696




 Score =  240 bits (121), Expect = 2e-63
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                           
Query: 304     agcgacctgatcatctacgggatgatcttcatgatccccatcgccccgttcggggtctac 363
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5738717 agcgacctgatcatctacgggatgatcttcatgatccccatcgccccgttcggggtctac 5738776

                                                                           
Query: 364     ggctgggtccatgccgacgcccacggcatggtgccgatggcctacctggtgggcatgctg 423
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5738777 ggctgggtccatgccgacgcccacggcatggtgccgatggcctacctggtgggcatgctg 5738836

                
Query: 424     g 424
               |
Sbjct: 5738837 g 5738837




 Score = 36.2 bits (18), Expect = 0.068
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                         
Query: 57      tggaagcggtgctgctggagatccgc 82
               |||| ||||||| |||||||||||||
Sbjct: 4900998 tggaggcggtgccgctggagatccgc 4901023




 Score = 36.2 bits (18), Expect = 0.068
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 401     tggcctacctggtgggca 418
               ||||||||||||||||||
Sbjct: 5182946 tggcctacctggtgggca 5182963




 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 115     cgcctgggccgagcgtc 131
               |||||||||||||||||
Sbjct: 1437139 cgcctgggccgagcgtc 1437155




 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 297     gctggtcagcgacctga 313
               |||||||||||||||||
Sbjct: 2618261 gctggtcagcgacctga 2618245




 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 59      gaagcggtgctgctgga 75
               |||||||||||||||||
Sbjct: 5893509 gaagcggtgctgctgga 5893493




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 114    gcgcctgggccgagcg 129
              ||||||||||||||||
Sbjct: 543402 gcgcctgggccgagcg 543387




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 303     cagcgacctgatcatc 318
               ||||||||||||||||
Sbjct: 1096676 cagcgacctgatcatc 1096661




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 345     cgccccgttcggggtctacg 364
               |||| |||||||||||||||
Sbjct: 1110001 cgccgcgttcggggtctacg 1110020




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 341     ccatcgccccgttcggggtc 360
               ||||||||||||||| ||||
Sbjct: 1522719 ccatcgccccgttcgtggtc 1522700




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 321     cgggatgatcttcatg 336
               ||||||||||||||||
Sbjct: 2150874 cgggatgatcttcatg 2150859




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 381     cgcccacggcatggtgccga 400
               |||||| |||||||||||||
Sbjct: 2209860 cgcccagggcatggtgccga 2209879




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 401     tggcctacctggtgggcatg 420
               ||||||||||||||| ||||
Sbjct: 2984565 tggcctacctggtggacatg 2984546




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 297     gctggtcagcgacctg 312
               ||||||||||||||||
Sbjct: 3427905 gctggtcagcgacctg 3427890




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 390     catggtgccgatggcc 405
               ||||||||||||||||
Sbjct: 3788421 catggtgccgatggcc 3788436




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                       
Query: 393     ggtgccgatggcctacctggtggg 416
               ||||||| ||| ||||||||||||
Sbjct: 3910840 ggtgccgctgggctacctggtggg 3910817




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 150     gcgatgaccggcgccgccgg 169
               ||||||||||||||| ||||
Sbjct: 3926141 gcgatgaccggcgcctccgg 3926122




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 240     ggagcccgtcatggcc 255
               ||||||||||||||||
Sbjct: 4378055 ggagcccgtcatggcc 4378070




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 115     cgcctgggccgagcgt 130
               ||||||||||||||||
Sbjct: 4412782 cgcctgggccgagcgt 4412767




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 59      gaagcggtgctgctgg 74
               ||||||||||||||||
Sbjct: 4431292 gaagcggtgctgctgg 4431277




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 488     cctttttttattcctc 503
               ||||||||||||||||
Sbjct: 5764500 cctttttttattcctc 5764515




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 408     cctggtgggcatgctg 423
               ||||||||||||||||
Sbjct: 5861922 cctggtgggcatgctg 5861937




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 334     atgatccccatcgccc 349
               ||||||||||||||||
Sbjct: 5982625 atgatccccatcgccc 5982640




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 156     accggcgccgccggtc 171
               ||||||||||||||||
Sbjct: 6033664 accggcgccgccggtc 6033649




 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 106     tgcggtgagcgcctgg 121
               ||||||||||||||||
Sbjct: 6487231 tgcggtgagcgcctgg 6487216




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 108    cggtgagcgcctggg 122
              |||||||||||||||
Sbjct: 241005 cggtgagcgcctggg 240991




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 157    ccggcgccgccggtc 171
              |||||||||||||||
Sbjct: 267169 ccggcgccgccggtc 267155




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 387    cggcatggtgccgatggcc 405
              ||||||||||||| |||||
Sbjct: 306565 cggcatggtgccgctggcc 306547




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 114    gcgcctgggccgagc 128
              |||||||||||||||
Sbjct: 437125 gcgcctgggccgagc 437111




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 401    tggcctacctggtgg 415
              |||||||||||||||
Sbjct: 450080 tggcctacctggtgg 450094




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 156    accggcgccgccggt 170
              |||||||||||||||
Sbjct: 568723 accggcgccgccggt 568709




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 763    cttccttcttttcct 777
              |||||||||||||||
Sbjct: 698736 cttccttcttttcct 698750




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 370    gtccatgccgacgcc 384
              |||||||||||||||
Sbjct: 898463 gtccatgccgacgcc 898449




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 295     cggctggtcagcgac 309
               |||||||||||||||
Sbjct: 1228617 cggctggtcagcgac 1228631




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 300     ggtcagcgacctgatcatc 318
               ||||| |||||||||||||
Sbjct: 1284639 ggtcaccgacctgatcatc 1284621




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 151     cgatgaccggcgccgccgg 169
               |||| ||||||||||||||
Sbjct: 1361678 cgatcaccggcgccgccgg 1361660




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 62      gcggtgctgctggag 76
               |||||||||||||||
Sbjct: 1519161 gcggtgctgctggag 1519175




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 154     tgaccggcgccgccg 168
               |||||||||||||||
Sbjct: 1623845 tgaccggcgccgccg 1623831




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 73      ggagatccgcaacga 87
               |||||||||||||||
Sbjct: 1670599 ggagatccgcaacga 1670613




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 401     tggcctacctggtgg 415
               |||||||||||||||
Sbjct: 1979000 tggcctacctggtgg 1978986




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 402     ggcctacctggtggg 416
               |||||||||||||||
Sbjct: 1990027 ggcctacctggtggg 1990013




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 298     ctggtcagcgacctg 312
               |||||||||||||||
Sbjct: 2067393 ctggtcagcgacctg 2067379




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 760     ccgcttccttctttt 774
               |||||||||||||||
Sbjct: 2083333 ccgcttccttctttt 2083319




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 267     cggataccggcaaca 281
               |||||||||||||||
Sbjct: 2209221 cggataccggcaaca 2209207




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 288     atctggacggctggt 302
               |||||||||||||||
Sbjct: 2396288 atctggacggctggt 2396274




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 160     gcgccgccggtcgcc 174
               |||||||||||||||
Sbjct: 2405501 gcgccgccggtcgcc 2405487




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 245     ccgtcatggccatcg 259
               |||||||||||||||
Sbjct: 2738626 ccgtcatggccatcg 2738612




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 409     ctggtgggcatgctg 423
               |||||||||||||||
Sbjct: 3220989 ctggtgggcatgctg 3220975




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 64      ggtgctgctggagat 78
               |||||||||||||||
Sbjct: 3226343 ggtgctgctggagat 3226329




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 64      ggtgctgctggagat 78
               |||||||||||||||
Sbjct: 3282488 ggtgctgctggagat 3282502




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 305     gcgacctgatcatct 319
               |||||||||||||||
Sbjct: 3496508 gcgacctgatcatct 3496494




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 107     gcggtgagcgcctgg 121
               |||||||||||||||
Sbjct: 3700341 gcggtgagcgcctgg 3700355




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 297     gctggtcagcgacct 311
               |||||||||||||||
Sbjct: 4326173 gctggtcagcgacct 4326187




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 489     ctttttttattcctc 503
               |||||||||||||||
Sbjct: 4342667 ctttttttattcctc 4342653




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 93      tgcgcacgccggatgcggtgagc 115
               ||||||||||||| ||| |||||
Sbjct: 4417741 tgcgcacgccggaggcgatgagc 4417719




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 297     gctggtcagcgacct 311
               |||||||||||||||
Sbjct: 4433051 gctggtcagcgacct 4433037




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 147     gatgcgatgaccggcgccg 165
               ||||||||||||| |||||
Sbjct: 4671843 gatgcgatgaccgccgccg 4671825




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 62      gcggtgctgctggag 76
               |||||||||||||||
Sbjct: 4815154 gcggtgctgctggag 4815140




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 107     gcggtgagcgcctgg 121
               |||||||||||||||
Sbjct: 4906651 gcggtgagcgcctgg 4906637




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 63      cggtgctgctggaga 77
               |||||||||||||||
Sbjct: 4928318 cggtgctgctggaga 4928332




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 401     tggcctacctggtgg 415
               |||||||||||||||
Sbjct: 5130027 tggcctacctggtgg 5130013




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 64      ggtgctgctggagatccgc 82
               |||||||||||| ||||||
Sbjct: 5133955 ggtgctgctggacatccgc 5133937




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 295     cggctggtcagcgac 309
               |||||||||||||||
Sbjct: 5437211 cggctggtcagcgac 5437225




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 158     cggcgccgccggtcg 172
               |||||||||||||||
Sbjct: 5541589 cggcgccgccggtcg 5541603




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 404     cctacctggtgggca 418
               |||||||||||||||
Sbjct: 5584945 cctacctggtgggca 5584931




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 154     tgaccggcgccgccg 168
               |||||||||||||||
Sbjct: 5812501 tgaccggcgccgccg 5812487




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 115     cgcctgggccgagcg 129
               |||||||||||||||
Sbjct: 5966985 cgcctgggccgagcg 5966971




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 370     gtccatgccgacgcc 384
               |||||||||||||||
Sbjct: 6002886 gtccatgccgacgcc 6002900




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 412     gtgggcatgctggtg 426
               |||||||||||||||
Sbjct: 6255564 gtgggcatgctggtg 6255550




 Score = 30.2 bits (15), Expect = 4.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 296     ggctggtcagcgacc 310
               |||||||||||||||
Sbjct: 6521118 ggctggtcagcgacc 6521104




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5493
Number of Sequences: 1
Number of extensions: 5493
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of query: 819
length of database: 6,534,396
effective HSP length: 16
effective length of query: 803
effective length of database: 6,534,380
effective search space: 5247107140
effective search space used: 5247107140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)