BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (864 letters)

Distribution of 48 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           450   e-126 



>GCTS_68 
          Length = 6534396

 Score =  450 bits (227), Expect = e-126
 Identities = 230/231 (99%)
 Strand = Plus / Plus

                                                                           
Query: 25      tacatcgagccgctgttcacccgcgacccgcgccacatcaagccggtccacgtgctgatg 84
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6029384 tacatcgagccgctgttcacccgcgacccgcgccacatcaagccggtccacgtgctgatg 6029443

                                                                           
Query: 85      gcgatgatggcgatccgcggcatctaccagcggcacaacgtgcagtcgctgaaccacggc 144
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6029444 gcgatgatggcgatccgcggcatctaccagcggcacaacgtgcagtcgctgaaccacggc 6029503

                                                                           
Query: 145     atcggcttcaacaccgcggccatcgagctgatcctgccgacctacggcgagtccctcggc 204
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6029504 atcggcttcaacaccgcggccatcgagctgatcctgccgacctacggcgagtccctcggc 6029563

                                                                  
Query: 205     ctgaagggcaagatctgccggcactggaccctcaacccgcacccgatcctt 255
               |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6029564 ctgaagggcaagatctgccggcactggaccctcaacccgcacccgaccctt 6029614






 Score = 38.2 bits (19), Expect = 0.018
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 100     cgcggcatctaccagcggc 118
               |||||||||||||||||||
Sbjct: 1651168 cgcggcatctaccagcggc 1651150






 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 167    tcgagctgatcctgccg 183
              |||||||||||||||||
Sbjct: 141877 tcgagctgatcctgccg 141861






 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 211     ggcaagatctgccggca 227
               |||||||||||||||||
Sbjct: 1334221 ggcaagatctgccggca 1334205






 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 197     ccctcggcctgaagggc 213
               |||||||||||||||||
Sbjct: 1397352 ccctcggcctgaagggc 1397368






 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 155     acaccgcggccatcgag 171
               |||||||||||||||||
Sbjct: 3695290 acaccgcggccatcgag 3695274






 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 197     ccctcggcctgaagggc 213
               |||||||||||||||||
Sbjct: 4145981 ccctcggcctgaagggc 4145997






 Score = 34.2 bits (17), Expect = 0.28
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 173     tgatcctgccgacctac 189
               |||||||||||||||||
Sbjct: 4328458 tgatcctgccgacctac 4328474






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 123    cgtgcagtcgctgaac 138
              ||||||||||||||||
Sbjct: 469358 cgtgcagtcgctgaac 469373






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 81     gatggcgatgatggcg 96
              ||||||||||||||||
Sbjct: 804739 gatggcgatgatggcg 804754






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 162    ggccatcgagctgatc 177
              ||||||||||||||||
Sbjct: 822042 ggccatcgagctgatc 822027






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 75     cgtgctgatggcgatg 90
              ||||||||||||||||
Sbjct: 884787 cgtgctgatggcgatg 884802






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 168    cgagctgatcctgccg 183
              ||||||||||||||||
Sbjct: 965231 cgagctgatcctgccg 965216






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 162     ggccatcgagctgatc 177
               ||||||||||||||||
Sbjct: 1262632 ggccatcgagctgatc 1262647






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 171     gctgatcctgccgacc 186
               ||||||||||||||||
Sbjct: 1575371 gctgatcctgccgacc 1575386






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 131     cgctgaaccacggcatcggc 150
               |||||| |||||||||||||
Sbjct: 2381993 cgctgatccacggcatcggc 2382012






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 159     cgcggccatcgagctg 174
               ||||||||||||||||
Sbjct: 4019890 cgcggccatcgagctg 4019875






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 75      cgtgctgatggcgatg 90
               ||||||||||||||||
Sbjct: 4376748 cgtgctgatggcgatg 4376763






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 90      gatggcgatccgcggc 105
               ||||||||||||||||
Sbjct: 5424908 gatggcgatccgcggc 5424923






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 75      cgtgctgatggcgatgatgg 94
               ||||||||||||| ||||||
Sbjct: 5746464 cgtgctgatggcggtgatgg 5746445






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 171     gctgatcctgccgacc 186
               ||||||||||||||||
Sbjct: 5908892 gctgatcctgccgacc 5908907






 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 84      ggcgatgatggcgatc 99
               ||||||||||||||||
Sbjct: 5946129 ggcgatgatggcgatc 5946144






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 80     tgatggcgatgatggcgat 98
              |||||||||||| ||||||
Sbjct: 465405 tgatggcgatgaaggcgat 465423






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 147    cggcttcaacaccgc 161
              |||||||||||||||
Sbjct: 577573 cggcttcaacaccgc 577559






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 145     atcggcttcaacacc 159
               |||||||||||||||
Sbjct: 1480051 atcggcttcaacacc 1480065






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 144     catcggcttcaacaccgcggcca 166
               ||||||||||| ||| |||||||
Sbjct: 1558883 catcggcttcaccacggcggcca 1558861






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 165     catcgagctgatcctgccg 183
               ||||||||||||| |||||
Sbjct: 2247678 catcgagctgatcttgccg 2247696






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 103     ggcatctaccagcgg 117
               |||||||||||||||
Sbjct: 2282906 ggcatctaccagcgg 2282892






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 45      ccgcgacccgcgcca 59
               |||||||||||||||
Sbjct: 2437472 ccgcgacccgcgcca 2437486






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 155     acaccgcggccatcg 169
               |||||||||||||||
Sbjct: 2572686 acaccgcggccatcg 2572672






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 36      gctgttcacccgcga 50
               |||||||||||||||
Sbjct: 2876957 gctgttcacccgcga 2876943






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 46      cgcgacccgcgccac 60
               |||||||||||||||
Sbjct: 3222022 cgcgacccgcgccac 3222008






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 158     ccgcggccatcgagc 172
               |||||||||||||||
Sbjct: 3587312 ccgcggccatcgagc 3587326






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 158     ccgcggccatcgagc 172
               |||||||||||||||
Sbjct: 3817532 ccgcggccatcgagc 3817518






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 42      cacccgcgacccgcg 56
               |||||||||||||||
Sbjct: 4675429 cacccgcgacccgcg 4675415






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 200     tcggcctgaagggca 214
               |||||||||||||||
Sbjct: 4750273 tcggcctgaagggca 4750287






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 33      gccgctgttcacccg 47
               |||||||||||||||
Sbjct: 4789228 gccgctgttcacccg 4789242






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 75      cgtgctgatggcgat 89
               |||||||||||||||
Sbjct: 5275014 cgtgctgatggcgat 5275000






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 84      ggcgatgatggcgat 98
               |||||||||||||||
Sbjct: 5300379 ggcgatgatggcgat 5300393






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 27      catcgagccgctgttcacc 45
               |||||||||||||| ||||
Sbjct: 5341277 catcgagccgctgtccacc 5341259






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 196     tccctcggcctgaag 210
               |||||||||||||||
Sbjct: 5359235 tccctcggcctgaag 5359249






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 139     cacggcatcggcttc 153
               |||||||||||||||
Sbjct: 5365650 cacggcatcggcttc 5365636






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 92      tggcgatccgcggca 106
               |||||||||||||||
Sbjct: 5544508 tggcgatccgcggca 5544522






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 193     gagtccctcggcctg 207
               |||||||||||||||
Sbjct: 5556849 gagtccctcggcctg 5556835






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 161     cggccatcgagctgatcct 179
               |||||||||||| ||||||
Sbjct: 5877764 cggccatcgagcggatcct 5877782






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 45      ccgcgacccgcgcca 59
               |||||||||||||||
Sbjct: 6038861 ccgcgacccgcgcca 6038847






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 100     cgcggcatctaccag 114
               |||||||||||||||
Sbjct: 6227860 cgcggcatctaccag 6227874






 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 300     ttccacaccaagatg 314
               |||||||||||||||
Sbjct: 6520652 ttccacaccaagatg 6520666






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4094
Number of Sequences: 1
Number of extensions: 4094
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of query: 864
length of database: 6,534,396
effective HSP length: 16
effective length of query: 848
effective length of database: 6,534,380
effective search space: 5541154240
effective search space used: 5541154240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)