BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (153 letters)

Distribution of 10 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           103   6e-23 
>GCTS_68 
          Length = 6534396

 Score =  103 bits (52), Expect = 6e-23
 Identities = 71/77 (92%), Gaps = 1/77 (1%)
 Strand = Plus / Minus

                                                                          
Query: 77     aaggntnggtgggggnctacgggggcgtctacaacgccgtaccgcaaggccaagttcaac 136
              |||| | |||||| | |||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 567218 aaggctcggtgggcgcctactggggcgtctacaacgccg-accgcaaggccaagttcaac 567160

                               
Query: 137    ttcaccgggccggtggt 153
              |||||||||||||||||
Sbjct: 567159 ttcaccgggccggtggt 567143

 Score = 30.2 bits (15), Expect = 0.72
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 44     aggcatcttctgcgg 58
              |||||||||||||||
Sbjct: 323813 aggcatcttctgcgg 323827

 Score = 30.2 bits (15), Expect = 0.72
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 137     ttcaccgggccggtg 151
               |||||||||||||||
Sbjct: 3704652 ttcaccgggccggtg 3704666

 Score = 30.2 bits (15), Expect = 0.72
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 117     accgcaaggccaagt 131
               |||||||||||||||
Sbjct: 5494240 accgcaaggccaagt 5494226

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 138    tcaccgggccggtg 151
              ||||||||||||||
Sbjct: 461370 tcaccgggccggtg 461357

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 111     cgccgtaccgcaag 124
               ||||||||||||||
Sbjct: 1287513 cgccgtaccgcaag 1287500

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 116     taccgcaaggccaa 129
               ||||||||||||||
Sbjct: 2177082 taccgcaaggccaa 2177069

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 102     cgtctacaacgccg 115
               ||||||||||||||
Sbjct: 2824412 cgtctacaacgccg 2824399

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 131     ttcaacttcaccgggccg 148
               |||||||||||| |||||
Sbjct: 4411977 ttcaacttcacccggccg 4411994

 Score = 28.2 bits (14), Expect = 2.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 37      accgaacaggcatc 50
               ||||||||||||||
Sbjct: 5680493 accgaacaggcatc 5680506
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 513
Number of Sequences: 1
Number of extensions: 513
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 153
length of database: 6,534,396
effective HSP length: 15
effective length of query: 138
effective length of database: 6,534,381
effective search space: 901744578
effective search space used: 901744578
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)