BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (323 letters)

Distribution of 67 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           573   e-164 



>GCTS_68 
          Length = 6534396

 Score =  573 bits (289), Expect = e-164
 Identities = 295/297 (99%)
 Strand = Plus / Minus

                                                                           
Query: 27      tacatcgccgccttgagtctcggccataaccgcacctttgttcgttttatggatgctgtg 86
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478973 tacatcgccgccttgagtctcggccataaccgcacctttgttcgttttatggatgctgtg 6478914

                                                                           
Query: 87      cgaacagcctagagaacccggcgcaggacgcaaatcggccggcaagagagttttctatca 146
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478913 cgaacagcctagagaacccggcgcaggacgcaaatcggccggcaagagagttttctatca 6478854

                                                                           
Query: 147     ggggaaaggaaagctctttgtaggaatcgccctacaaaaaagatgcaccccggaatgggc 206
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478853 ggggaaaggaaagctctttgtaggaatcgccctacaaaaaagatgcaccccggaatgggc 6478794

                                                                           
Query: 207     cagaccgctctgggaaggggctttcgagaagggcaaaggtttgcgcgccagcgctctccg 266
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6478793 cagaccgctctgggaaggggctttcgagaagggcaaaggtttgcgcgccagcgctctccg 6478734

                                                                        
Query: 267     gctggcgcgcaacggcgtccttcgcgcttggcccagttctggaaacgctgctccagg 323
               |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 6478733 gctggcgcgcaacggcgtcctcagcgcttggcccagttctggaaacgctgctccagg 6478677






 Score = 34.2 bits (17), Expect = 0.10
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 269     tggcgcgcaacggcgtc 285
               |||||||||||||||||
Sbjct: 2374681 tggcgcgcaacggcgtc 2374665






 Score = 32.2 bits (16), Expect = 0.40
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                  
Query: 241    aaaggtttgcgcgccagcgc 260
              |||||| |||||||||||||
Sbjct: 345997 aaaggtatgcgcgccagcgc 345978






 Score = 32.2 bits (16), Expect = 0.40
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 264     ccggctggcgcgcaacggcg 283
               |||||||||||||| |||||
Sbjct: 1480552 ccggctggcgcgcagcggcg 1480571






 Score = 32.2 bits (16), Expect = 0.40
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 257     gcgctctccggctggc 272
               ||||||||||||||||
Sbjct: 3948438 gcgctctccggctggc 3948453






 Score = 32.2 bits (16), Expect = 0.40
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 116     gcaaatcggccggcaa 131
               ||||||||||||||||
Sbjct: 4447500 gcaaatcggccggcaa 4447515






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 268    ctggcgcgcaacggc 282
              |||||||||||||||
Sbjct: 526338 ctggcgcgcaacggc 526324






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 245    gtttgcgcgccagcg 259
              |||||||||||||||
Sbjct: 893087 gtttgcgcgccagcg 893073






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 266     ggctggcgcgcaacg 280
               |||||||||||||||
Sbjct: 1175557 ggctggcgcgcaacg 1175571






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 149     ggaaaggaaagctct 163
               |||||||||||||||
Sbjct: 1659039 ggaaaggaaagctct 1659053






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 308     gaaacgctgctccag 322
               |||||||||||||||
Sbjct: 1985797 gaaacgctgctccag 1985811






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 262     ctccggctggcgcgc 276
               |||||||||||||||
Sbjct: 2378578 ctccggctggcgcgc 2378592






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 193     accccggaatgggcc 207
               |||||||||||||||
Sbjct: 3491438 accccggaatgggcc 3491452






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 28      acatcgccgccttga 42
               |||||||||||||||
Sbjct: 4477462 acatcgccgccttga 4477448






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 30      atcgccgccttgagt 44
               |||||||||||||||
Sbjct: 4646004 atcgccgccttgagt 4646018






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 269     tggcgcgcaacggcgtcct 287
               |||||||||||||| ||||
Sbjct: 4933054 tggcgcgcaacggcttcct 4933036






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 195     cccggaatgggccag 209
               |||||||||||||||
Sbjct: 5294930 cccggaatgggccag 5294944






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 269     tggcgcgcaacggcg 283
               |||||||||||||||
Sbjct: 5392248 tggcgcgcaacggcg 5392262






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 279     cggcgtccttcgcgc 293
               |||||||||||||||
Sbjct: 5625280 cggcgtccttcgcgc 5625294






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 279     cggcgtccttcgcgc 293
               |||||||||||||||
Sbjct: 6162912 cggcgtccttcgcgc 6162926






 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 268     ctggcgcgcaacggc 282
               |||||||||||||||
Sbjct: 6246337 ctggcgcgcaacggc 6246323






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                           
Query: 264   ccggctggcgcgca 277
             ||||||||||||||
Sbjct: 33294 ccggctggcgcgca 33281






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 267    gctggcgcgcaacg 280
              ||||||||||||||
Sbjct: 168101 gctggcgcgcaacg 168088






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 102    acccggcgcaggac 115
              ||||||||||||||
Sbjct: 228318 acccggcgcaggac 228331






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 279    cggcgtccttcgcg 292
              ||||||||||||||
Sbjct: 261681 cggcgtccttcgcg 261694






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                
Query: 191    gcaccccggaatgggcca 208
              |||||| |||||||||||
Sbjct: 749967 gcaccctggaatgggcca 749984






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 254    ccagcgctctccgg 267
              ||||||||||||||
Sbjct: 893617 ccagcgctctccgg 893604






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                
Query: 267    gctggcgcgcaacggcgt 284
              ||||||||||||| ||||
Sbjct: 906340 gctggcgcgcaacagcgt 906323






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 263    tccggctggcgcgc 276
              ||||||||||||||
Sbjct: 995543 tccggctggcgcgc 995530






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 305     ctggaaacgctgctccag 322
               ||||||||||||| ||||
Sbjct: 1156193 ctggaaacgctgcgccag 1156210






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 267     gctggcgcgcaacg 280
               ||||||||||||||
Sbjct: 1481098 gctggcgcgcaacg 1481085






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 270     ggcgcgcaacggcg 283
               ||||||||||||||
Sbjct: 1673787 ggcgcgcaacggcg 1673800






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 269     tggcgcgcaacggc 282
               ||||||||||||||
Sbjct: 1731710 tggcgcgcaacggc 1731697






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 247     ttgcgcgccagcgc 260
               ||||||||||||||
Sbjct: 2040745 ttgcgcgccagcgc 2040758






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 20/22 (90%)
 Strand = Plus / Minus

                                     
Query: 264     ccggctggcgcgcaacggcgtc 285
               ||||||||||| |||| |||||
Sbjct: 2198038 ccggctggcgcccaaccgcgtc 2198017






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 279     cggcgtccttcgcg 292
               ||||||||||||||
Sbjct: 2431522 cggcgtccttcgcg 2431535






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 267     gctggcgcgcaacg 280
               ||||||||||||||
Sbjct: 2585604 gctggcgcgcaacg 2585617






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 97      agagaacccggcgc 110
               ||||||||||||||
Sbjct: 2654218 agagaacccggcgc 2654231






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 267     gctggcgcgcaacg 280
               ||||||||||||||
Sbjct: 3273294 gctggcgcgcaacg 3273281






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 287     ttcgcgcttggccc 300
               ||||||||||||||
Sbjct: 3330728 ttcgcgcttggccc 3330741






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 247     ttgcgcgccagcgc 260
               ||||||||||||||
Sbjct: 3397090 ttgcgcgccagcgc 3397103






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 104     ccggcgcaggacgc 117
               ||||||||||||||
Sbjct: 3818974 ccggcgcaggacgc 3818961






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 267     gctggcgcgcaacg 280
               ||||||||||||||
Sbjct: 3936651 gctggcgcgcaacg 3936664






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 269     tggcgcgcaacggc 282
               ||||||||||||||
Sbjct: 4025732 tggcgcgcaacggc 4025719






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 262     ctccggctggcgcg 275
               ||||||||||||||
Sbjct: 4084149 ctccggctggcgcg 4084136






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 247     ttgcgcgccagcgc 260
               ||||||||||||||
Sbjct: 4137857 ttgcgcgccagcgc 4137844






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 247     ttgcgcgccagcgc 260
               ||||||||||||||
Sbjct: 4148437 ttgcgcgccagcgc 4148424






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 267     gctggcgcgcaacg 280
               ||||||||||||||
Sbjct: 4148426 gctggcgcgcaacg 4148439






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 261     tctccggctggcgc 274
               ||||||||||||||
Sbjct: 4492119 tctccggctggcgc 4492106






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 285     ccttcgcgcttggc 298
               ||||||||||||||
Sbjct: 4657111 ccttcgcgcttggc 4657124






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 290     gcgcttggcccagt 303
               ||||||||||||||
Sbjct: 4663837 gcgcttggcccagt 4663824






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 266     ggctggcgcgcaac 279
               ||||||||||||||
Sbjct: 4895933 ggctggcgcgcaac 4895946






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 96      tagagaacccggcgcagg 113
               ||||| ||||||||||||
Sbjct: 4897907 tagagcacccggcgcagg 4897890






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 35      cgccttgagtctcggcca 52
               ||||||||||| ||||||
Sbjct: 4940682 cgccttgagtcgcggcca 4940665






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 267     gctggcgcgcaacg 280
               ||||||||||||||
Sbjct: 5040419 gctggcgcgcaacg 5040406






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 247     ttgcgcgccagcgc 260
               ||||||||||||||
Sbjct: 5040408 ttgcgcgccagcgc 5040421






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 252     cgccagcgctctcc 265
               ||||||||||||||
Sbjct: 5156829 cgccagcgctctcc 5156842






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 267     gctggcgcgcaacggcgt 284
               ||||| ||||||||||||
Sbjct: 5202237 gctggtgcgcaacggcgt 5202220






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 153     aggaaagctctttgtagg 170
               |||||||||||| |||||
Sbjct: 5551114 aggaaagctcttcgtagg 5551097






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 103     cccggcgcaggacg 116
               ||||||||||||||
Sbjct: 5665210 cccggcgcaggacg 5665223






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 285     ccttcgcgcttggc 298
               ||||||||||||||
Sbjct: 5794728 ccttcgcgcttggc 5794741






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 266     ggctggcgcgcaac 279
               ||||||||||||||
Sbjct: 5978951 ggctggcgcgcaac 5978938






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 27      tacatcgccgcctt 40
               ||||||||||||||
Sbjct: 5986218 tacatcgccgcctt 5986205






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 272     cgcgcaacggcgtc 285
               ||||||||||||||
Sbjct: 6308089 cgcgcaacggcgtc 6308076






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 100     gaacccggcgcaggacgc 117
               ||||||||||| ||||||
Sbjct: 6311013 gaacccggcgccggacgc 6310996






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 265     cggctggcgcgcaa 278
               ||||||||||||||
Sbjct: 6502279 cggctggcgcgcaa 6502292






 Score = 28.2 bits (14), Expect = 6.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 267     gctggcgcgcaacg 280
               ||||||||||||||
Sbjct: 6522607 gctggcgcgcaacg 6522620






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2575
Number of Sequences: 1
Number of extensions: 2575
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of query: 323
length of database: 6,534,396
effective HSP length: 16
effective length of query: 307
effective length of database: 6,534,380
effective search space: 2006054660
effective search space used: 2006054660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)