BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (332 letters)

Distribution of 20 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           254   6e-68 
>GCTS_68 
          Length = 6534396

 Score =  254 bits (128), Expect = 6e-68
 Identities = 128/128 (100%)
 Strand = Plus / Minus

                                                                          
Query: 60     tatgcctatggcatgcaactggatgtggctcgcgttatatcttcaaccgacacttccaat 119
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257933 tatgcctatggcatgcaactggatgtggctcgcgttatatcttcaaccgacacttccaat 257874

                                                                          
Query: 120    gcctgcggcatcgttcccgcacgcatgacctacgaagattcgaacgggcagaaacatacc 179
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257873 gcctgcggcatcgttcccgcacgcatgacctacgaagattcgaacgggcagaaacatacc 257814

                      
Query: 180    gtcgaata 187
              ||||||||
Sbjct: 257813 gtcgaata 257806

 Score =  172 bits (87), Expect = 2e-43
 Identities = 96/100 (96%)
 Strand = Plus / Minus

                                                                          
Query: 232    acctccgggtcnacctccnaaggatcgcgccacgnggggcagctcgcccatccggcgcga 291
              ||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 257761 acctccgggtcgacctccgaaggatcgcgccacgaggggcagctcgcccatccggcgcga 257702

                                                      
Query: 292    tcattgtgtactcggcggcgaaaataccgcccctcggcga 331
              ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 257701 tcattgtgtactcggcggcgaaaatcccgcccctcggcga 257662

 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 274     ctcgcccatccggcg 288
               |||||||||||||||
Sbjct: 1521068 ctcgcccatccggcg 1521054

 Score = 30.2 bits (15), Expect = 1.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 275     tcgcccatccggcgc 289
               |||||||||||||||
Sbjct: 5895127 tcgcccatccggcgc 5895113

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 197    gcaggcctgggcag 210
              ||||||||||||||
Sbjct: 469785 gcaggcctgggcag 469798

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 188    ccatcatctgcagg 201
              ||||||||||||||
Sbjct: 988622 ccatcatctgcagg 988609

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 69      ggcatgcaactgga 82
               ||||||||||||||
Sbjct: 2379186 ggcatgcaactgga 2379173

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 207     gcaggcctggccaa 220
               ||||||||||||||
Sbjct: 2486623 gcaggcctggccaa 2486610

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 75      caactggatgtggc 88
               ||||||||||||||
Sbjct: 2743684 caactggatgtggc 2743697

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 299     gtactcggcggcga 312
               ||||||||||||||
Sbjct: 2821088 gtactcggcggcga 2821101

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 69      ggcatgcaactgga 82
               ||||||||||||||
Sbjct: 3001977 ggcatgcaactgga 3001990

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 307     cggcgaaaataccg 320
               ||||||||||||||
Sbjct: 3527791 cggcgaaaataccg 3527804

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 275     tcgcccatccggcg 288
               ||||||||||||||
Sbjct: 3617953 tcgcccatccggcg 3617940

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 195     ctgcaggcctgggc 208
               ||||||||||||||
Sbjct: 3675728 ctgcaggcctgggc 3675715

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 319     cgcccctcggcgac 332
               ||||||||||||||
Sbjct: 4433652 cgcccctcggcgac 4433665

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 207     gcaggcctggccaa 220
               ||||||||||||||
Sbjct: 4878623 gcaggcctggccaa 4878636

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 280     catccggcgcgatc 293
               ||||||||||||||
Sbjct: 5434539 catccggcgcgatc 5434526

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 69      ggcatgcaactgga 82
               ||||||||||||||
Sbjct: 5659930 ggcatgcaactgga 5659943

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 177     accgtcgaatacca 190
               ||||||||||||||
Sbjct: 5753632 accgtcgaatacca 5753645

 Score = 28.2 bits (14), Expect = 6.5
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 179     cgtcgaataccatc 192
               ||||||||||||||
Sbjct: 6514377 cgtcgaataccatc 6514364
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1839
Number of Sequences: 1
Number of extensions: 1839
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of query: 332
length of database: 6,534,396
effective HSP length: 16
effective length of query: 316
effective length of database: 6,534,380
effective search space: 2064864080
effective search space used: 2064864080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)