BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (209 letters)

Distribution of 40 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           264   4e-71 

>GCTS_68 
          Length = 6534396

 Score =  264 bits (133), Expect = 4e-71
 Identities = 133/133 (100%)
 Strand = Plus / Minus

                                                                           
Query: 60      taacggcgacgcgcctcgagaccttcctccaggctgacggcgacgaaacgcgccttctgg 119
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6370315 taacggcgacgcgcctcgagaccttcctccaggctgacggcgacgaaacgcgccttctgg 6370256

                                                                           
Query: 120     ttcggttgcatctgcgccagccggttcaggtcggggctgatcaccgtgcccagcgtggca 179
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6370255 ttcggttgcatctgcgccagccggttcaggtcggggctgatcaccgtgcccagcgtggca 6370196

                            
Query: 180     tatcccccaccgg 192
               |||||||||||||
Sbjct: 6370195 tatcccccaccgg 6370183




 Score = 38.2 bits (19), Expect = 0.004
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 150     tcggggctgatcaccgtgcccagcgtg 176
               |||| |||||||||||||||| |||||
Sbjct: 2959109 tcggtgctgatcaccgtgcccggcgtg 2959083




 Score = 32.2 bits (16), Expect = 0.26
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 82     cttcctccaggctgac 97
              ||||||||||||||||
Sbjct: 740894 cttcctccaggctgac 740879




 Score = 30.2 bits (15), Expect = 1.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                
Query: 83    ttcctccaggctgacggcg 101
             ||||||||||||| |||||
Sbjct: 43773 ttcctccaggctgtcggcg 43755




 Score = 30.2 bits (15), Expect = 1.0
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                 
Query: 70     gcgcctcgagaccttcctc 88
              |||||| ||||||||||||
Sbjct: 157180 gcgcctggagaccttcctc 157162




 Score = 30.2 bits (15), Expect = 1.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 92      gctgacggcgacgaa 106
               |||||||||||||||
Sbjct: 1103933 gctgacggcgacgaa 1103947




 Score = 30.2 bits (15), Expect = 1.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 186     ccaccggcatcatct 200
               |||||||||||||||
Sbjct: 1355291 ccaccggcatcatct 1355277




 Score = 30.2 bits (15), Expect = 1.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 77      gagaccttcctccag 91
               |||||||||||||||
Sbjct: 1477142 gagaccttcctccag 1477156




 Score = 30.2 bits (15), Expect = 1.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 151     cggggctgatcaccg 165
               |||||||||||||||
Sbjct: 2670131 cggggctgatcaccg 2670145




 Score = 30.2 bits (15), Expect = 1.0
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 89      caggctgacggcgacgaaacgcg 111
               |||||||||||||| ||| ||||
Sbjct: 4944738 caggctgacggcgaagaagcgcg 4944760




 Score = 30.2 bits (15), Expect = 1.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 167     gcccagcgtggcata 181
               |||||||||||||||
Sbjct: 5703695 gcccagcgtggcata 5703709




 Score = 30.2 bits (15), Expect = 1.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 81      ccttcctccaggctg 95
               |||||||||||||||
Sbjct: 5781719 ccttcctccaggctg 5781733




 Score = 30.2 bits (15), Expect = 1.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 185     cccaccggcatcatc 199
               |||||||||||||||
Sbjct: 6331449 cccaccggcatcatc 6331463




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                           
Query: 137   cagccggttcaggt 150
             ||||||||||||||
Sbjct: 53854 cagccggttcaggt 53867




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 161    caccgtgcccagcg 174
              ||||||||||||||
Sbjct: 154816 caccgtgcccagcg 154803




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 142    ggttcaggtcgggg 155
              ||||||||||||||
Sbjct: 265215 ggttcaggtcgggg 265202




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 20/22 (90%)
 Strand = Plus / Minus

                                    
Query: 81     ccttcctccaggctgacggcga 102
              ||||||||||||| | ||||||
Sbjct: 509184 ccttcctccaggccggcggcga 509163




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 154    ggctgatcaccgtg 167
              ||||||||||||||
Sbjct: 510494 ggctgatcaccgtg 510507




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                        
Query: 135    gccagccggttcaggtcggggctgat 160
              |||||| || || |||||||||||||
Sbjct: 735674 gccagcaggctctggtcggggctgat 735699




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 75      tcgagaccttcctc 88
               ||||||||||||||
Sbjct: 1022804 tcgagaccttcctc 1022817




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 131     ctgcgccagccggt 144
               ||||||||||||||
Sbjct: 1133562 ctgcgccagccggt 1133549




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 113     cttctggttcggtt 126
               ||||||||||||||
Sbjct: 1316645 cttctggttcggtt 1316658




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 127     gcatctgcgccagc 140
               ||||||||||||||
Sbjct: 1498067 gcatctgcgccagc 1498054




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 161     caccgtgcccagcg 174
               ||||||||||||||
Sbjct: 1599231 caccgtgcccagcg 1599244




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 73      cctcgagaccttcc 86
               ||||||||||||||
Sbjct: 1659765 cctcgagaccttcc 1659752




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 118     ggttcggttgcatc 131
               ||||||||||||||
Sbjct: 1752996 ggttcggttgcatc 1752983




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 20/22 (90%)
 Strand = Plus / Plus

                                     
Query: 143     gttcaggtcggggctgatcacc 164
               |||| |||||||||||| ||||
Sbjct: 1757223 gttctggtcggggctgaccacc 1757244




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 91      ggctgacggcgacg 104
               ||||||||||||||
Sbjct: 2129457 ggctgacggcgacg 2129444




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 131     ctgcgccagccggt 144
               ||||||||||||||
Sbjct: 2242276 ctgcgccagccggt 2242263




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 97      cggcgacgaaacgc 110
               ||||||||||||||
Sbjct: 2582542 cggcgacgaaacgc 2582555




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 190     cggcatcatctgca 203
               ||||||||||||||
Sbjct: 2628000 cggcatcatctgca 2628013




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 131     ctgcgccagccggt 144
               ||||||||||||||
Sbjct: 3292383 ctgcgccagccggt 3292370




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 100     cgacgaaacgcgcc 113
               ||||||||||||||
Sbjct: 3386182 cgacgaaacgcgcc 3386195




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 156     ctgatcaccgtgcc 169
               ||||||||||||||
Sbjct: 4137167 ctgatcaccgtgcc 4137180




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 82      cttcctccaggctg 95
               ||||||||||||||
Sbjct: 4499638 cttcctccaggctg 4499625




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 127     gcatctgcgccagc 140
               ||||||||||||||
Sbjct: 4810648 gcatctgcgccagc 4810661




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 88      ccaggctgacggcg 101
               ||||||||||||||
Sbjct: 5710655 ccaggctgacggcg 5710668




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 82      cttcctccaggctg 95
               ||||||||||||||
Sbjct: 6382513 cttcctccaggctg 6382526




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 80      accttcctccaggc 93
               ||||||||||||||
Sbjct: 6393610 accttcctccaggc 6393623




 Score = 28.2 bits (14), Expect = 4.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 127     gcatctgcgccagc 140
               ||||||||||||||
Sbjct: 6395634 gcatctgcgccagc 6395647




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1803
Number of Sequences: 1
Number of extensions: 1803
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of query: 209
length of database: 6,534,396
effective HSP length: 15
effective length of query: 194
effective length of database: 6,534,381
effective search space: 1267669914
effective search space used: 1267669914
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)