BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (231 letters)

Distribution of 70 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           383   e-107 



>GCTS_68 
          Length = 6534396

 Score =  383 bits (193), Expect = e-107
 Identities = 211/217 (97%)
 Strand = Plus / Plus

                                                                           
Query: 15      taatgcgctggcgactgccgccagatcgtcgaatatcagggtgccctctggcaagggctt 74
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809149 taatgcgctggcgactgccgccagatcgtcgaatatcagggtgccctctggcaagggctt 5809208

                                                                           
Query: 75      gcccagcgtacgtacaccttttccggtctttaccaacaccggctgacaatcgacggcccg 134
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809209 gcccagcgtacgtacaccttttccggtctttaccaacaccggctgacaatcgacggcccg 5809268

                                                                           
Query: 135     cgccgcctccaggtcaccgatgctgtcgccgacgaaccagatacccgacagatcgatcct 194
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 5809269 cgccgcctccaggtcaccgatgctgtcgccgacgaaccagatacccgacagatcgacccc 5809328

                                                    
Query: 195     gtggtggttggcgaactgccgcagcatacccggcttc 231
               || ||| ||| ||| ||||||||||||||||||||||
Sbjct: 5809329 gtagtgcttgccgatctgccgcagcatacccggcttc 5809365






 Score = 36.2 bits (18), Expect = 0.018
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 129     ggcccgcgccgcctccag 146
               ||||||||||||||||||
Sbjct: 3515984 ggcccgcgccgcctccag 3516001






 Score = 32.2 bits (16), Expect = 0.28
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 134  gcgccgcctccaggtc 149
            ||||||||||||||||
Sbjct: 6920 gcgccgcctccaggtc 6905






 Score = 32.2 bits (16), Expect = 0.28
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 131    cccgcgccgcctccag 146
              ||||||||||||||||
Sbjct: 205408 cccgcgccgcctccag 205393






 Score = 32.2 bits (16), Expect = 0.28
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 128     cggcccgcgccgcctc 143
               ||||||||||||||||
Sbjct: 1009196 cggcccgcgccgcctc 1009211






 Score = 32.2 bits (16), Expect = 0.28
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 128     cggcccgcgccgcctc 143
               ||||||||||||||||
Sbjct: 1103020 cggcccgcgccgcctc 1103005






 Score = 32.2 bits (16), Expect = 0.28
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 126     gacggcccgcgccgcc 141
               ||||||||||||||||
Sbjct: 1254128 gacggcccgcgccgcc 1254113






 Score = 32.2 bits (16), Expect = 0.28
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 133     cgcgccgcctccaggt 148
               ||||||||||||||||
Sbjct: 1719845 cgcgccgcctccaggt 1719830






 Score = 32.2 bits (16), Expect = 0.28
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 128     cggcccgcgccgcctc 143
               ||||||||||||||||
Sbjct: 2279653 cggcccgcgccgcctc 2279668






 Score = 32.2 bits (16), Expect = 0.28
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 128     cggcccgcgccgcctc 143
               ||||||||||||||||
Sbjct: 2524503 cggcccgcgccgcctc 2524518






 Score = 32.2 bits (16), Expect = 0.28
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 152     cgatgctgtcgccgac 167
               ||||||||||||||||
Sbjct: 2595001 cgatgctgtcgccgac 2594986






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 150    accgatgctgtcgcc 164
              |||||||||||||||
Sbjct: 405557 accgatgctgtcgcc 405543






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 143    ccaggtcaccgatgc 157
              |||||||||||||||
Sbjct: 461648 ccaggtcaccgatgc 461662






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 116    gctgacaatcgacggcccg 134
              |||||| ||||||||||||
Sbjct: 918340 gctgaccatcgacggcccg 918358






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 135     cgccgcctccaggtc 149
               |||||||||||||||
Sbjct: 1449864 cgccgcctccaggtc 1449850






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 45      gaatatcagggtgcc 59
               |||||||||||||||
Sbjct: 1454872 gaatatcagggtgcc 1454886






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 131     cccgcgccgcctcca 145
               |||||||||||||||
Sbjct: 2658579 cccgcgccgcctcca 2658593






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 135     cgccgcctccaggtc 149
               |||||||||||||||
Sbjct: 2668348 cgccgcctccaggtc 2668362






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 152     cgatgctgtcgccga 166
               |||||||||||||||
Sbjct: 3963827 cgatgctgtcgccga 3963841






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 159     gtcgccgacgaaccagatacccg 181
               ||||||||||| || ||||||||
Sbjct: 4090404 gtcgccgacgatcccgatacccg 4090426






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 129     ggcccgcgccgcctc 143
               |||||||||||||||
Sbjct: 4122235 ggcccgcgccgcctc 4122249






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 194     tgtggtggttggcga 208
               |||||||||||||||
Sbjct: 6216333 tgtggtggttggcga 6216319






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 205     gcgaactgccgcagc 219
               |||||||||||||||
Sbjct: 6273402 gcgaactgccgcagc 6273416






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                           
Query: 161   cgccgacgaaccag 174
             ||||||||||||||
Sbjct: 10382 cgccgacgaaccag 10369






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 41     cgtcgaatatcagg 54
              ||||||||||||||
Sbjct: 257814 cgtcgaatatcagg 257801






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                
Query: 128    cggcccgcgccgcctcca 145
              ||||| ||||||||||||
Sbjct: 435367 cggccagcgccgcctcca 435350






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 134    gcgccgcctccagg 147
              ||||||||||||||
Sbjct: 437680 gcgccgcctccagg 437667






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 134    gcgccgcctccagg 147
              ||||||||||||||
Sbjct: 738160 gcgccgcctccagg 738147






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 207    gaactgccgcagca 220
              ||||||||||||||
Sbjct: 864883 gaactgccgcagca 864870






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 129     ggcccgcgccgcct 142
               ||||||||||||||
Sbjct: 1025552 ggcccgcgccgcct 1025539






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 128     cggcccgcgccgcc 141
               ||||||||||||||
Sbjct: 1347394 cggcccgcgccgcc 1347407






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 133     cgcgccgcctccag 146
               ||||||||||||||
Sbjct: 1519982 cgcgccgcctccag 1519995






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 129     ggcccgcgccgcct 142
               ||||||||||||||
Sbjct: 1564568 ggcccgcgccgcct 1564581






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 134     gcgccgcctccagg 147
               ||||||||||||||
Sbjct: 1567390 gcgccgcctccagg 1567377






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 133     cgcgccgcctccag 146
               ||||||||||||||
Sbjct: 1818712 cgcgccgcctccag 1818725






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 32      ccgccagatcgtcgaata 49
               ||||| ||||||||||||
Sbjct: 2149187 ccgcctgatcgtcgaata 2149170






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 128     cggcccgcgccgcc 141
               ||||||||||||||
Sbjct: 2253643 cggcccgcgccgcc 2253630






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 195     gtggtggttggcga 208
               ||||||||||||||
Sbjct: 2266589 gtggtggttggcga 2266602






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 128     cggcccgcgccgcc 141
               ||||||||||||||
Sbjct: 2280409 cggcccgcgccgcc 2280422






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 204     ggcgaactgccgcagcat 221
               |||||||||||| |||||
Sbjct: 2587461 ggcgaactgccggagcat 2587478






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 134     gcgccgcctccagg 147
               ||||||||||||||
Sbjct: 2775477 gcgccgcctccagg 2775490






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 125     cgacggcccgcgccgcct 142
               |||| |||||||||||||
Sbjct: 2816221 cgacagcccgcgccgcct 2816204






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 35      ccagatcgtcgaat 48
               ||||||||||||||
Sbjct: 2864719 ccagatcgtcgaat 2864706






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 159     gtcgccgacgaacc 172
               ||||||||||||||
Sbjct: 3094748 gtcgccgacgaacc 3094735






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 31      gccgccagatcgtc 44
               ||||||||||||||
Sbjct: 3167634 gccgccagatcgtc 3167647






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 159     gtcgccgacgaacc 172
               ||||||||||||||
Sbjct: 3313138 gtcgccgacgaacc 3313151






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 30      tgccgccagatcgtcgaa 47
               ||||| ||||||||||||
Sbjct: 3429917 tgccggcagatcgtcgaa 3429900






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 106     accaacaccggctg 119
               ||||||||||||||
Sbjct: 3436550 accaacaccggctg 3436537






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 200     ggttggcgaactgc 213
               ||||||||||||||
Sbjct: 3441987 ggttggcgaactgc 3442000






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 135     cgccgcctccaggt 148
               ||||||||||||||
Sbjct: 3733176 cgccgcctccaggt 3733163






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 152     cgatgctgtcgccg 165
               ||||||||||||||
Sbjct: 3753155 cgatgctgtcgccg 3753168






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 128     cggcccgcgccgcc 141
               ||||||||||||||
Sbjct: 3871052 cggcccgcgccgcc 3871065






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 130     gcccgcgccgcctc 143
               ||||||||||||||
Sbjct: 3915755 gcccgcgccgcctc 3915742






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 130     gcccgcgccgcctc 143
               ||||||||||||||
Sbjct: 4154417 gcccgcgccgcctc 4154430






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 129     ggcccgcgccgcct 142
               ||||||||||||||
Sbjct: 4231583 ggcccgcgccgcct 4231570






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 65      gcaagggcttgcccagcg 82
               |||||| |||||||||||
Sbjct: 4231714 gcaaggccttgcccagcg 4231731






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 203     tggcgaactgccgcagca 220
               ||||||||||||| ||||
Sbjct: 4345173 tggcgaactgccggagca 4345156






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 130     gcccgcgccgcctc 143
               ||||||||||||||
Sbjct: 4359338 gcccgcgccgcctc 4359351






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 152     cgatgctgtcgccg 165
               ||||||||||||||
Sbjct: 4396096 cgatgctgtcgccg 4396083






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 209     actgccgcagcata 222
               ||||||||||||||
Sbjct: 4590518 actgccgcagcata 4590505






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 132     ccgcgccgcctcca 145
               ||||||||||||||
Sbjct: 4624649 ccgcgccgcctcca 4624662






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 136     gccgcctccaggtc 149
               ||||||||||||||
Sbjct: 4678650 gccgcctccaggtc 4678663






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 160     tcgccgacgaacca 173
               ||||||||||||||
Sbjct: 4682062 tcgccgacgaacca 4682049






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 125     cgacggcccgcgcc 138
               ||||||||||||||
Sbjct: 4739280 cgacggcccgcgcc 4739293






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 32      ccgccagatcgtcg 45
               ||||||||||||||
Sbjct: 4767459 ccgccagatcgtcg 4767446






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 124     tcgacggcccgcgc 137
               ||||||||||||||
Sbjct: 5557589 tcgacggcccgcgc 5557576






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 124     tcgacggcccgcgc 137
               ||||||||||||||
Sbjct: 5600090 tcgacggcccgcgc 5600077






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 59      cctctggcaagggcttgc 76
               |||||| |||||||||||
Sbjct: 5663699 cctctgccaagggcttgc 5663682






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 162     gccgacgaaccaga 175
               ||||||||||||||
Sbjct: 6410271 gccgacgaaccaga 6410258






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 102     ctttaccaacaccg 115
               ||||||||||||||
Sbjct: 6465536 ctttaccaacaccg 6465523






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2193
Number of Sequences: 1
Number of extensions: 2193
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of query: 231
length of database: 6,534,396
effective HSP length: 15
effective length of query: 216
effective length of database: 6,534,381
effective search space: 1411426296
effective search space used: 1411426296
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)